- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S184.g13817.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S184 [110,673 / 111,504]
Amino acid sequence
Length: 276
>Harore.CG.MTP2014.S184.g13817.01.p
MFGSEGEKDGQLCRPWGIACDSRGYFVVADRSNNRIQIFTPDGSFLRKFGIPGKRPGQLD
RPAGVAVDRDHRIVLADKDNHRIQIFTFNGNFLLMFGERGSKNGQFNYPWDVASDSRGMI
AVTDTRNHRVQLFNNEGMFISKYGFEGMMWKHFDSPRGIDFISNTSALVVSDFNNHRLVI
IQPDLRSARFLGSEGSQPSQFLRPQGVAVDEDGNFVIADSRNHRLQVFSPSGTFIAMLGG
TQGNGPNQMDRPSGIAIMPNAGIAVVDFGNNRILVY
Nucleotide sequence
Length: 831
>Harore.CG.MTP2014.S184.g13817.01.t
ATGTTCGGCAGTGAAGGGGAAAAAGACGGGCAGCTCTGTAGACCATGGGGCATCGCTTGC
GATTCTCGTGGTTACTTTGTTGTCGCAGACAGAAGCAACAACAGAATCCAGATTTTCACA
CCAGATGGTAGTTTTCTGAGAAAATTTGGCATCCCAGGGAAACGCCCCGGTCAGCTCGAC
AGACCGGCCGGTGTCGCGGTCGACCGGGACCATCGCATTGTGTTGGCGGACAAGGATAAT
CATCGTATACAGATTTTCACGTTCAACGGGAATTTCTTGCTCATGTTTGGTGAAAGAGGT
TCCAAGAATGGACAGTTCAATTATCCCTGGGACGTCGCCTCGGACTCGAGAGGCATGATA
GCCGTGACCGATACCCGCAATCACAGAGTGCAGCTGTTCAATAACGAAGGTATGTTCATC
AGTAAGTATGGGTTTGAAGGGATGATGTGGAAACATTTCGATTCACCTCGGGGTATCGAT
TTTATTTCAAACACGTCAGCTCTGGTTGTTTCCGATTTTAACAACCACAGACTTGTCATC
ATCCAACCCGACCTCAGGTCGGCACGTTTCTTGGGCTCGGAGGGTTCTCAACCCTCTCAG
TTTTTGCGTCCTCAGGGTGTGGCAGTAGACGAAGATGGGAATTTCGTCATCGCTGACTCT
AGAAACCATAGGTTGCAGGTATTTTCGCCTTCTGGCACGTTTATCGCTATGCTTGGAGGT
ACACAGGGTAACGGACCGAATCAAATGGACCGTCCTTCGGGAATTGCCATCATGCCCAAT
GCTGGCATCGCTGTGGTTGATTTCGGAAACAACCGCATTTTGGTGTATTAG
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[1-42] 16.551 - T[46-89] 15.461 - T[96-136] 15.769 - T[140-184] 9.355 - T[188-231] 16.509 - T[243-276] 8.471 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-92] 1.3E-34 - T[93-189] 2.0E-20 - T[190-276] 4.6E-26 |
| Pfam |
NHL_repeat (IPR001258) - T[12-39] 3.0E-7 - T[59-86] 5.8E-8 - T[106-131] 1.4E-7 - T[201-228] 3.3E-10 - T[251-276] 4.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 67.273 % | 412 | 5.86E-139 |
| TRIM2_HUMAN | 33.577 % | 152 | 4.39E-42 |
| TRIM3_HUMAN | 35.401 % | 160 | 1.09E-44 |
