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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...' > 
  2. Transcript 'Cisavi.CG.ENS81.R54....' > 
  3. Transcript 'Cisavi.CG.ENS81.R54....' > 
  4. Transcript 'Haaura.CG.MTP2014.S4...' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S17.g08016.01.t

Possible name(s)

RPRD1A; RPRD1B; RPRD2

Gene model

Harore.CG.MTP2014.S17.g08016

Location

S17 [261,234 / 267,726]

Sequences

Amino acid sequence

Length: 1,005

>Harore.CG.MTP2014.S17.g08016.01.p
MSKSLSIESLSKKLRTVANTQDSIPMLSVWIIHHKANHQVIVNKWLECMKEAKPSHRLTL
FYLANDVIQNCHRKKAPVFKESFGEVLPEAITYLRDDTILPNIERVLTVWSRRNIYESET
IDDLYAALLTNKPPDKLKQRLLAEYKPSTLIELISAFKKQEEQILIEEKQLSRSRVDVSS
TDDIHKLKDKIGGEKFSRNFEESACHLEQFITEFEKYVEQRKQLVDALLQGSVFYSAQYH
EAKIVVNAYKSFNNRVMKMKRMSDQVKLKLSASLSPPFDAPSPENSPQQENEPDDMDMSD
SDQELGSKPSKIVSVDTNVLRPIPPQRFRHDNDLTKRIASLDTTQITENPRSGGVITRPG
MRGASSSSALLSSFQEAFTKQTSSSSVSKVSNNSTPIGKIPSASPSASPPSPTGSPELNI
ASPPRHQSLESRLADIFSQNPKAIDVNDNTGSESDTESIPPDKSVSDNEHKNTTKGSPSL
PIVGLTESIISKLAAGTSSFSPDTSGKNRNGDKNSLSSLSSNSPSWQNAIPVIGGMRNFN
SSLLENLKSLIKKEESGDSTPLQDENLDINRTPGKKKEFQIETITSSHTEKISEMALPPP
SFSGDALNFLTKFMGGQTAAKDLEPFSQWSDSQNDTFPGLDIKRKNRTDETSIKLQEDGM
WREQPIRTTLDWAREKNGKVTKQDTDYRMQKNNDRENSKTNSDIPSTEGSFERDVHESTL
GILSANLKPVSISNIFNARHRSKEDVGRFNSDEKSEDSVDQFKNILRKKSSEQSPQFAPL
SSTEKLSFSFTQHTTEDLIVEEEEIELDEDVPVNLNAGNDSNVHAKSTMENSFQTGLPDS
NNHHEINDFMKSKSNDHVIQASSINNSKHLNKRTLISQPPLNEVMVRQTIANDTYYNELE
SSFIHKEHPSHFDRRLPPNYPLPDEGFRRQPQHPGARPYPGPYERHRRPYGRRPPNIWDQ
EVRAPAMRHRFPPQDNRPFGGFHERGGRGIRGARPRRFMPRNPYY

Nucleotide sequence

Length: 3,386

>Harore.CG.MTP2014.S17.g08016.01.t
TTATACCAGCTATATATCACAGTACTATAATAATTTAAGGTGGTATTGCTATTTTGGGAT
GACTCGATTCCCAATATACCTCTTATTGATCCTTAATAACAGATAAAAGTGCTCGTGTGT
GTGTAATATGTTACTTACGCTGCCCTTTAGCTTATTAAAAAAAAGTAGTAATTATAGAAA
GTCAGAGTCTGCAAGTTGTAACATATTCTTGATTTTACTCTGAAGACAAACTTCAAGGTA
ACATTGCCTTTGAACTGACTACTTTTCATTGTGCTGAAGATTTATTTATATCGATGAAAA
CTTGTCATGCAATATGTCAAAGTCACTAAGCATCGAATCGCTTAGCAAGAAATTGCGAAC
TGTAGCAAACACACAGGATAGCATTCCTATGTTGTCAGTGTGGATCATCCATCACAAAGC
GAATCATCAAGTGATCGTTAACAAGTGGCTAGAATGCATGAAAGAAGCGAAACCATCTCA
CCGCTTAACTCTGTTCTATCTCGCAAACGACGTGATTCAGAACTGCCATCGTAAGAAAGC
TCCGGTTTTCAAGGAATCTTTCGGCGAGGTGCTGCCGGAAGCTATCACATATTTACGTGA
CGATACTATTTTGCCGAACATTGAAAGAGTTTTGACGGTGTGGTCTCGAAGAAACATTTA
CGAATCAGAAACGATTGATGATCTCTATGCTGCTTTGCTAACCAACAAACCGCCAGACAA
GCTGAAGCAACGTTTGTTAGCTGAGTATAAGCCCTCGACATTGATTGAATTAATCTCGGC
ATTCAAGAAACAAGAAGAACAAATATTAATTGAAGAAAAACAGCTAAGCCGCTCCCGTGT
TGACGTTTCCAGCACTGACGACATTCATAAACTGAAAGATAAAATCGGTGGTGAAAAATT
CTCTCGGAATTTTGAGGAGTCTGCCTGTCACCTTGAACAGTTTATTACTGAATTTGAAAA
GTATGTTGAACAGAGAAAGCAGTTGGTCGATGCGTTGCTACAAGGCTCTGTATTCTACAG
TGCTCAATACCACGAGGCAAAAATAGTAGTCAATGCATATAAAAGTTTCAATAATCGTGT
GATGAAAATGAAACGAATGAGTGATCAAGTAAAACTTAAACTTTCTGCCTCGTTATCTCC
ACCCTTTGATGCACCCTCGCCTGAAAACAGCCCCCAACAAGAAAACGAGCCTGACGACAT
GGACATGTCAGATTCTGATCAGGAGCTTGGAAGCAAACCCTCTAAAATTGTTTCTGTCGA
TACGAATGTACTCAGACCGATTCCGCCACAGCGTTTCCGTCATGACAACGACTTGACAAA
AAGAATTGCTTCATTGGACACAACCCAAATAACTGAAAATCCTCGTTCCGGCGGCGTCAT
CACACGGCCAGGAATGAGAGGTGCATCGTCGTCTTCTGCTCTTTTATCTTCTTTTCAAGA
AGCGTTCACAAAGCAGACTTCTTCATCCAGTGTTTCAAAGGTGTCGAATAATTCTACGCC
TATCGGGAAGATACCATCAGCTTCTCCTTCAGCATCGCCTCCTTCCCCCACGGGTTCCCC
CGAACTCAACATTGCCAGTCCTCCGCGTCATCAAAGCCTTGAGTCGAGACTGGCAGATAT
TTTCAGTCAAAATCCCAAGGCTATTGACGTCAATGACAACACCGGCAGTGAGAGCGATAC
TGAATCCATTCCTCCCGATAAGTCGGTTTCAGATAATGAACATAAAAATACCACAAAGGG
CAGCCCAAGTCTGCCAATAGTTGGGTTAACAGAAAGCATAATATCGAAATTAGCAGCCGG
GACTTCTTCATTTTCACCAGACACTTCTGGGAAAAATAGAAACGGTGATAAAAATAGCTT
GTCCTCCTTGAGTTCAAATTCACCATCGTGGCAGAATGCCATACCTGTCATCGGTGGCAT
GAGGAATTTTAACAGCTCTCTGTTGGAGAATTTGAAAAGTCTTATCAAGAAAGAAGAATC
TGGAGATTCGACACCTTTGCAAGATGAAAACCTTGACATCAATCGCACTCCTGGCAAGAA
AAAGGAATTTCAGATAGAGACAATTACATCATCACACACAGAAAAAATATCAGAGATGGC
CCTTCCTCCTCCATCCTTCAGTGGTGATGCCCTAAACTTTTTAACAAAGTTTATGGGTGG
CCAGACTGCCGCAAAGGACCTGGAACCATTTTCTCAGTGGAGTGACAGCCAAAATGATAC
TTTTCCTGGGCTGGATATAAAGCGGAAAAATCGCACGGATGAGACGAGCATAAAATTGCA
AGAGGATGGTATGTGGCGGGAGCAACCAATAAGAACCACGTTGGATTGGGCTCGAGAAAA
AAATGGGAAGGTCACAAAGCAAGATACGGATTATAGAATGCAGAAGAACAATGATCGTGA
AAATAGTAAAACAAATTCTGATATACCAAGCACGGAGGGTTCGTTTGAGCGTGATGTACA
CGAATCGACTCTGGGTATTTTGTCTGCAAACCTTAAACCGGTTTCCATTTCGAATATATT
CAACGCACGACATCGTAGTAAGGAAGATGTTGGTCGTTTCAATTCTGATGAAAAGTCTGA
AGATTCAGTTGATCAGTTCAAAAATATATTGAGGAAAAAATCATCTGAGCAATCACCCCA
ATTCGCACCACTGTCCTCTACAGAAAAACTGTCTTTTTCTTTCACCCAACACACCACTGA
GGATCTTATTGTGGAAGAAGAGGAGATAGAACTAGACGAGGACGTTCCCGTCAATCTCAA
CGCTGGTAATGACAGTAATGTACACGCTAAATCAACGATGGAAAACAGTTTTCAAACTGG
ACTCCCAGATTCCAACAATCATCATGAAATTAACGATTTTATGAAGAGCAAATCGAATGA
TCATGTCATCCAAGCTTCCTCCATCAACAACAGCAAACATTTGAATAAAAGAACACTTAT
ATCCCAGCCCCCACTAAATGAAGTAATGGTTCGCCAAACCATTGCTAATGATACGTATTA
CAATGAACTTGAAAGTAGTTTCATACATAAAGAACATCCATCTCATTTTGATAGAAGACT
CCCTCCAAACTACCCTTTGCCAGATGAAGGTTTCAGAAGACAACCACAACATCCAGGTGC
TAGACCGTATCCTGGGCCTTATGAACGCCATAGAAGACCATATGGAAGACGACCTCCCAA
TATTTGGGATCAGGAAGTTAGAGCACCTGCAATGAGACACCGTTTTCCACCTCAAGACAA
CCGTCCTTTTGGTGGTTTCCACGAAAGGGGTGGTAGAGGCATTAGGGGTGCTCGTCCTAG
GAGGTTCATGCCTAGGAACCCATATTACTAGATTTTGTTGAAATGCAAGATTTCATTCAA
ATAGCTTTGATTTTAATGGAACATTT

InterProScan

ProSiteProfiles
CID_dom (IPR006569) - T[2-132] 31.224
Gene3D
ENTH_VHS (IPR008942) - T[2-140] 1.6E-34
SUPERFAMILY
ENTH_VHS (IPR008942) - T[9-134] 5.62E-16
SMART
CID_dom (IPR006569) - T[9-129] 2.5E-30
Pfam
RNA_pol_II-bd (IPR006903) - T[57-116] 3.9E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RPRD2_HUMAN 42.857 % 253 2.18E-69
RPR1A_HUMAN 29.675 % 112 5.89E-27
RPR1B_HUMAN 30.769 % 97.4 8.71E-22