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- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S17.g03014.01.t
Possible name(s)
SNX30; SNX4; SNX7
Gene model
Location
S17 [257,987 / 260,862]
Amino acid sequence
Length: 438
>Harore.CG.MTP2014.S17.g03014.01.p
MAGSVEETFDMFDEEGTSIPPGPEVAEDAKKKNKSSRTMIDAVEISVSEPEKQVKPGGLK
MQDTYTAFLVETKPRNLENIDPELDEVTSVWRRYSEFELLRNYLVVKYPAVVMAPMPEKR
ANFIWTKIATDTFDPEFLEKRRAALEIFLHRICGHTKLSNDNVLRTFFKQAEGWRDIVMA
TGYQADADSWLRTLNASWRVKQPDSSLEEVITYANELHNNVSTVLKARAKLVDRLYAIYK
IHGNYARIYKEWSTIEDSQTSEVLRKASMEIDKLSNSIDALVDEEETYVESLKEYFYFAE
SLKAVVKKHESLQYDVEYYENQLMSAHITKKQITDGGDRSFSFSGMKAKLFGGDTPEQKE
AKLVKVEENIKRLKSMVEEKRIAANSFLSETKKEIKGFKSRKQSDIREILTNYVILQIKM
AKEGKVTWTRFKAILQSL
Nucleotide sequence
Length: 1,654
>Harore.CG.MTP2014.S17.g03014.01.t
CTGGAGCTAAAAGCCTTGTTTTGCTAGCTATCAGGGGACTAAGGAGCCATTGGAAATAAG
AATGGCTGGTTCTGTCGAAGAAACGTTTGATATGTTTGACGAGGAAGGCACCAGTATTCC
ACCAGGCCCTGAAGTCGCTGAAGACGCTAAAAAGAAAAACAAAAGCTCAAGAACCATGAT
TGATGCGGTTGAAATCTCAGTTTCAGAACCTGAGAAACAAGTTAAGCCAGGAGGATTAAA
AATGCAAGACACATATACTGCCTTTCTTGTCGAAACGAAACCAAGAAATCTTGAAAACAT
TGATCCAGAACTTGACGAAGTTACTTCTGTTTGGAGAAGATACAGTGAATTTGAGCTTCT
GAGAAATTATCTCGTTGTTAAATATCCAGCGGTTGTCATGGCACCAATGCCTGAGAAAAG
AGCCAACTTTATTTGGACAAAAATTGCAACAGACACGTTCGACCCCGAATTTCTTGAGAA
ACGGCGTGCGGCATTGGAGATATTTCTACATCGGATTTGTGGGCACACGAAACTGAGCAA
TGATAATGTTCTCAGAACATTCTTTAAACAAGCAGAGGGCTGGAGAGATATTGTGATGGC
TACTGGATATCAGGCGGATGCTGATTCGTGGTTACGAACTCTGAATGCTTCTTGGCGCGT
TAAACAACCAGATTCGAGTTTGGAAGAAGTGATAACCTACGCGAACGAGTTGCATAACAA
CGTATCGACTGTATTGAAAGCCCGAGCTAAATTAGTGGACCGATTATATGCAATATACAA
GATCCATGGAAATTACGCTCGAATATACAAGGAATGGAGCACGATTGAAGATTCGCAGAC
CTCAGAGGTTTTACGAAAAGCAAGTATGGAGATTGATAAATTATCCAATTCGATTGACGC
TCTTGTCGATGAAGAGGAAACGTATGTCGAATCGCTCAAAGAGTATTTCTATTTTGCGGA
ATCATTAAAGGCTGTTGTAAAAAAACATGAATCTTTGCAATACGACGTCGAGTATTATGA
AAATCAATTAATGTCTGCCCACATAACAAAGAAGCAAATAACTGATGGTGGAGACAGATC
GTTTTCGTTCAGTGGTATGAAGGCGAAATTATTCGGCGGTGACACACCAGAGCAAAAAGA
GGCTAAGTTGGTCAAGGTCGAAGAAAATATCAAAAGACTAAAGTCAATGGTTGAGGAAAA
ACGCATCGCAGCCAATTCTTTCCTTTCTGAAACGAAAAAGGAAATAAAAGGTTTCAAAAG
TCGAAAGCAATCGGATATCCGTGAAATCCTCACAAATTATGTGATTCTCCAAATAAAAAT
GGCGAAAGAGGGAAAAGTTACCTGGACTCGTTTCAAAGCAATTTTGCAATCATTATAGGA
CCCAATCAGTAGCGTAAGCTTAGATGTTGATATTCCCAACAAGACTGACTAGATTTTGAT
TGTGGATCAGAGAATAAACTTGTGATTAGTAACTTGTTAGTGAATCCTGAAACACATGTT
GATATCAATCAAAAGAAATCATCTTTTTGAAGTTTCTCAAATTAATCATTCTGCTTACTA
TCTTGTATTTTATTGTACGATATTTCAAACAATGCAATTTATCGCCTTGAAAATTTAGAA
AGATATATCTAAATATATGATTATTGTTAGGAAA
| PANTHER |
SNX4 (IPR034783) - T[34-424] 1.1E-105 |
| Gene3D |
PX_dom_sf (IPR036871) - T[35-189] 2.4E-29 |
| SMART |
Phox (IPR001683) - T[41-171] 5.6E-18 |
| Pfam |
Phox (IPR001683) - T[44-170] 5.8E-20 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[45-172] 5.36E-23 |
| ProSiteProfiles |
Phox (IPR001683) - T[46-175] 15.799 |
| Gene3D |
AH/BAR_dom_sf (IPR027267) - T[198-438] 5.2E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX4_HUMAN | 41.527 % | 354 | 3.93E-119 |