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TRANSCRIPT CARD

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  1. Region 'REG00001349' > 
  2. Region 'REG00001328' > 
  3. Region 'REG00001348' > 
  4. Transcript 'KH2012:KH.C9.421.v3....' > 
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S175.g12927.01.t

Possible name(s)

BCO1; BCO2; RPE65

Gene model

Harore.CG.MTP2014.S175.g12927

Location

S175 [25,051 / 28,477]

Sequences

Amino acid sequence

Length: 529

>Harore.CG.MTP2014.S175.g12927.01.p
MVEPDGFSGDIDHNSNDIPFIQKTLSSRIYQFCSVFYVVLGYTKGENDYYIIFALVQNYE
YTITRVCSNMTELNITKFPHLSTLEKDKQVEYVTPVEGQVTGEIPLWLRGSWYRNGPGVI
HFKEQSVTHWFDGMALPRRFEIKDGKAFYRSRFVQGQSFQRNTQAGRVAVPEFGTHVQTK
EKASFFSKAMTMISLPEFTDNCLINIMRVGEYLFAISETNLIRRLNPETLETMERVDLSK
YMPINLMSSNPLYDSEGSIYNFTTSIFSMGKTKYNLVTIPKPEQGSSLKQAFTSATCVGS
VDSSWRVSPSYHHSFCMSTNYALFVEMPLKLSIPKMAVAHWSNMCYSDCMESHSDLNTNI
YVIDKRSGKFLSTNYATDPMIVYQSINAYEKDGQLVMDICCYDDIGFFDKFSMKNLTMDP
QEFQTTFDTDSNRVKAKRFVLPLDVTKATMQNENLVTLPDSKCTAIKDKNGDVFLTGEVL
ADGTEYPAINTSYTSKPYRYFYSSGGECLPPGEKAVTPFHVCISNRKYE

Nucleotide sequence

Length: 1,612

>Harore.CG.MTP2014.S175.g12927.01.t
ATGGTGGAGCCTGATGGATTTTCTGGTGATATCGATCACAATTCAAATGACATACCGTTC
ATACAGAAGACACTTTCTTCGAGAATTTATCAGTTTTGTTCAGTTTTCTATGTTGTTCTA
GGCTATACAAAAGGAGAAAACGATTACTATATAATATTCGCCTTAGTTCAAAATTACGAA
TATACTATTACGAGAGTTTGCAGCAACATGACTGAATTGAATATTACAAAATTCCCTCAT
CTTTCAACGCTGGAAAAAGATAAGCAAGTAGAATACGTCACTCCTGTTGAAGGTCAAGTT
ACCGGCGAAATACCGCTATGGCTTCGTGGTTCCTGGTATCGCAATGGACCCGGTGTTATT
CATTTCAAAGAGCAAAGTGTTACCCATTGGTTCGATGGAATGGCCCTACCAAGAAGATTT
GAAATCAAGGACGGTAAGGCATTTTACAGAAGTCGCTTCGTTCAAGGACAAAGTTTTCAG
CGCAATACACAAGCTGGAAGAGTGGCTGTGCCGGAATTTGGAACGCACGTCCAAACTAAA
GAGAAAGCTAGTTTCTTTTCAAAGGCAATGACGATGATATCTCTGCCAGAATTCACGGAT
AATTGCCTGATTAATATAATGCGCGTTGGTGAGTATTTATTCGCGATTAGCGAAACCAAT
CTGATTCGCCGCTTGAACCCCGAAACACTGGAAACTATGGAACGGGTCGACTTATCGAAA
TACATGCCAATCAACTTGATGTCGTCAAATCCACTGTACGATTCCGAAGGATCCATTTAC
AACTTCACTACGTCAATTTTTAGTATGGGCAAGACGAAATACAACCTCGTGACCATACCA
AAACCTGAACAAGGGTCGTCTCTCAAACAAGCTTTCACTTCAGCAACATGCGTTGGAAGT
GTTGACTCGTCATGGAGAGTAAGTCCATCATACCATCACAGTTTCTGTATGTCAACCAAC
TATGCGCTGTTCGTCGAAATGCCTCTCAAATTGTCGATACCGAAAATGGCAGTTGCACAT
TGGTCCAACATGTGCTACAGTGATTGCATGGAATCTCATTCTGATTTAAATACGAATATT
TATGTCATCGATAAAAGATCGGGCAAATTTCTGTCAACTAACTACGCAACTGACCCGATG
ATAGTGTACCAGTCGATAAATGCGTACGAGAAAGACGGACAGCTGGTGATGGATATCTGC
TGCTACGACGACATCGGATTTTTCGATAAATTCAGTATGAAAAATCTTACTATGGATCCC
CAAGAGTTCCAGACTACCTTCGATACGGACAGTAACAGAGTAAAAGCAAAAAGATTCGTT
TTGCCACTAGATGTCACTAAGGCGACGATGCAAAATGAAAACCTCGTTACTCTACCCGAC
AGTAAGTGCACGGCAATCAAGGATAAAAACGGAGATGTGTTTTTGACCGGAGAGGTTCTA
GCAGATGGCACTGAGTATCCGGCAATTAATACATCCTATACGAGCAAACCTTATCGCTAT
TTCTACTCTTCGGGAGGAGAATGTCTTCCACCAGGGGAAAAGGCAGTAACACCGTTTCAT
GTTTGTATTAGTAATCGTAAATACGAATAAATCGTGAAAATTGACACTGAAG

InterProScan

PANTHER
Carotenoid_Oase (IPR004294) - T[89-507] 3.3E-113
Pfam
Carotenoid_Oase (IPR004294) - T[91-505] 6.3E-70

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BCDO1_HUMAN 39.767 % 342 6.54E-112
BCDO2_HUMAN 31.207 % 246 2.31E-74
RPE65_HUMAN 35.225 % 259 6.58E-80