- Transcript 'KH2012:KH.C2.36.v3.A...' >
- Transcript 'KH2012:KH.C8.891.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S16.g04466.01.t
Possible name(s)
CSTF2; CSTF2T; NCL
Gene model
Location
S16 [584,394 / 587,753]
Amino acid sequence
Length: 542
>Harore.CG.MTP2014.S16.g04466.01.p
MVQMKTGKSKAKKEVKKPTKPVVAAKEESSEEEEDEEEESDSEEEVKVVTKATPKANNKK
AKAVAKQESEEEDSDEEEDDDSEEEETKAPSKTTKKAVSKKNAKAESSEDDDDDDDEDDS
DEEGEKKAKKNGTKEKVEDDEDDDDEDDDDDDDDEEEEEEEKEEMEVSKPDKKRKQNDDK
TENAKKAKSDETVTMSFNNLPEGTDDNSFNKFLKSKGIQCISCRANYSRGRAFIDISVDD
KGKAIGLNQVEWKGSELEVGEDAKRSQQAGGGVNMSDRDARTMFVRNLPYSATEEEISDL
FENVEEVRILIDRQTGNSKGICFVQFDTPESLKTNMEKKDGVELQGRSLYVDYAGNKGGG
GGGAGGDRRRSSGGGQEGKTLFVKGITEDMTQDSLLEYFEGATEARMPQDNGKNKFFAYI
EFASADQAMKVYKSAKGGIETNDGNLMVDFAKDKRGGGDRGRGGGGFRGGRGRGGGFGGG
RGYGGRGGGRGYGGRGGGRGGGFGGRGRGGYAQVGMVCIDIDCLCAQCIVSIALLLLLFS
IK
Nucleotide sequence
Length: 1,989
>Harore.CG.MTP2014.S16.g04466.01.t
AGATTGTTGAAAAGAAATTAAGATAATTTATCGAAATCAAATTAAAAACACATCAAACAA
TACAAGAAAAGAAAAATGGTGCAAATGAAGACAGGAAAATCCAAGGCCAAGAAAGAGGTC
AAGAAACCTACAAAACCAGTTGTAGCTGCCAAGGAGGAAAGCAGTGAAGAAGAAGAAGAC
GAAGAAGAAGAAAGTGATAGTGAAGAAGAGGTAAAAGTTGTCACAAAGGCTACGCCAAAA
GCTAACAATAAGAAAGCAAAGGCTGTTGCAAAGCAGGAAAGTGAGGAGGAAGATAGCGAT
GAAGAGGAGGACGATGATTCCGAAGAAGAGGAAACTAAGGCTCCTAGCAAAACCACAAAA
AAAGCAGTTTCAAAGAAAAATGCCAAAGCCGAGAGCAGCGAGGATGATGATGATGATGAC
GATGAAGATGACAGTGATGAAGAGGGTGAAAAAAAAGCAAAGAAGAATGGAACCAAAGAA
AAAGTAGAGGATGATGAAGATGACGATGATGAAGACGACGATGATGATGATGATGATGAA
GAAGAGGAAGAGGAAGAAAAAGAAGAGATGGAGGTTTCTAAACCTGACAAGAAAAGGAAG
CAAAACGATGATAAAACGGAGAATGCAAAGAAAGCAAAATCAGATGAAACCGTCACAATG
TCTTTCAATAACCTTCCGGAGGGGACGGACGACAATTCTTTTAACAAGTTCCTAAAAAGC
AAAGGCATACAATGCATAAGTTGCAGAGCTAATTACAGTAGAGGAAGAGCGTTCATAGAT
ATCAGTGTGGATGACAAAGGAAAAGCAATTGGTTTAAATCAAGTCGAATGGAAAGGCAGT
GAATTGGAGGTGGGCGAAGATGCAAAACGTAGTCAGCAAGCAGGAGGAGGGGTGAACATG
TCCGACCGCGATGCAAGGACTATGTTTGTTCGGAATCTGCCCTATTCCGCCACGGAAGAA
GAAATCTCGGATCTTTTTGAAAATGTTGAAGAAGTTCGAATATTGATTGACAGACAGACT
GGCAATTCAAAAGGGATATGCTTTGTCCAATTTGATACTCCTGAATCATTGAAAACAAAT
ATGGAAAAGAAGGATGGTGTTGAACTACAAGGACGTTCATTGTACGTGGACTATGCCGGA
AATAAGGGTGGTGGAGGTGGTGGAGCTGGTGGTGACAGGAGGAGATCAAGTGGTGGTGGC
CAAGAAGGCAAAACCTTGTTCGTGAAAGGAATTACAGAAGATATGACTCAGGACTCCCTA
TTGGAATATTTTGAAGGTGCAACAGAGGCTAGAATGCCCCAGGATAACGGAAAAAACAAG
TTTTTTGCATACATTGAATTTGCCTCTGCGGATCAAGCTATGAAAGTTTACAAGTCAGCC
AAAGGTGGTATCGAAACAAATGACGGAAATCTTATGGTCGATTTTGCCAAGGATAAAAGG
GGAGGTGGAGATCGTGGACGAGGTGGCGGCGGATTCCGAGGTGGACGTGGGAGAGGAGGT
GGTTTCGGTGGCGGACGTGGTTACGGAGGTAGAGGCGGCGGACGTGGTTACGGCGGTAGA
GGCGGCGGACGCGGTGGTGGTTTCGGTGGTAGAGGCCGGGGTGGCTATGCTCAAGTAGGA
ATGGTATGTATCGATATTGATTGTTTGTGTGCCCAATGTATAGTCAGCATTGCTCTACTC
TTGTTACTATTTTCCATCAAATAAATATGTTTCGGGTGTTGTTAAGTTAATTTTCTAGTT
GCATAATTCCAAGTACACTTCAGACTGCCAAAATGCATTTTATTTGATGCATTCATCGCT
GTAATAACTGTATTAACCTTCATTGTTCTTGTCGTAAGATCGCTTCCTACTCGAGCAATG
GAAACTGTCGTCATTTGATTCGTTTTAAACTTGGATGAATTTGTACATAAATAACGATTT
TGTTTCTGTACAGATATTGTAAGTGTCTTTTTGTATTCTTACAAATACACTGTCAATCTT
GTAACAAAA
| SMART |
RRM_dom (IPR000504) - T[194-260] 3.4 - T[282-352] 3.0E-20 - T[380-449] 4.6E-9 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[260-359] 1.9E-23 - T[367-460] 1.4E-13 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[275-375] 3.63E-26 - T[376-485] 1.21E-18 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[281-356] 17.813 - T[379-453] 12.322 |
| Pfam |
RRM_dom (IPR000504) - T[284-349] 5.3E-16 - T[381-437] 5.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|