- Clone 'ma157i09' >
- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S164.g07886.02.t
Possible name(s)
TRAF3; TRAF5; TRAF6
Gene model
Location
S164 [183,031 / 187,603]
Amino acid sequence
Length: 558
>Harore.CG.MTP2014.S164.g07886.02.p
MQMNSTSYRSELAPQATTTMQEGLEGYDYEFVPSLDNKHMCPICLLALRDPVQTECGHRF
CQPCISRSLEHQKKCPVDNDPLTTNQLFQDKYAHREVLDLKVKCNNKGCDFVSELRLIEN
HEEVCEMRKIPCKNMCGLWLLSQDAVFHEENQCPRRPVSCDVCSQTYPFIAEEQHKDECK
QHQPVKCPHCTHELKLYKLQSHITTECLQAPIKCVFERVGCQQELPRHSIKEHMEQSTQI
HLQYLLSTVSQLSKNNTELSGTLEDIVTRTNQLERDDSKYDTNSGNIELYNHGLENGLDK
DHGDLEAIDEIALIKEFNHQMEMESSNNRAGVSSVEPSSIRPGQDAAINNETEERIISLD
HHVRELMAKMENQITTTRDLSTKLTQIEQRMMQQELRCCNGLYYWKIRDYSRLRRSASAG
ELPVLHSPGFYTSPQGYRICIRVNLDGVESAQGTHLSLFVHLMKGENDELLNWPFAGVIT
LTVVNQRDLPEQRSHISETLHARSNLMAFQKPRTERNQKGYGYIDFFPLNMIESEGFIKN
DALVIKAQVTVETPAAGT
Nucleotide sequence
Length: 3,354
>Harore.CG.MTP2014.S164.g07886.02.t
AAAAAATATCAATAGTTAGTACTAAAAAGCGTAACGATTTTCCATTCCGAATATTTCCTT
TTTGTATTTACTCATTATCAACTGCTCCAACATATAGTAGAAAAGTAACTCATGACTATT
AGGTACTTGGCGAGTCTAAAATGCAAATGAATTCGACATCGTATAGATCGGAATTAGCTC
CACAAGCAACCACAACAATGCAAGAGGGCCTGGAAGGATACGATTATGAGTTTGTTCCAA
GCCTCGATAATAAACATATGTGCCCTATATGTTTATTGGCATTGAGGGATCCTGTTCAGA
CGGAATGTGGACATAGGTTCTGTCAGCCTTGTATCTCTAGATCATTAGAGCATCAAAAAA
AATGTCCGGTGGACAATGACCCTCTCACAACCAACCAACTATTCCAAGACAAGTATGCTC
ATCGAGAGGTGTTAGATTTAAAGGTCAAATGCAATAACAAAGGTTGCGATTTTGTGTCAG
AACTACGGCTTATAGAGAACCATGAAGAGGTGTGTGAAATGAGAAAAATTCCATGTAAAA
ATATGTGCGGTCTGTGGCTTCTTTCACAAGACGCAGTTTTTCATGAAGAGAACCAGTGTC
CCCGGCGACCGGTGTCGTGCGACGTCTGCAGCCAAACTTATCCGTTTATAGCCGAAGAGC
AACACAAAGATGAATGCAAGCAGCATCAACCGGTGAAATGTCCTCATTGCACACATGAAT
TAAAATTGTACAAGTTACAATCTCACATAACCACAGAATGTCTCCAAGCACCAATAAAAT
GCGTATTTGAAAGAGTAGGATGCCAGCAAGAGCTACCACGGCACAGTATAAAAGAACATA
TGGAGCAGTCGACTCAAATACATTTGCAATACTTATTAAGCACTGTCAGTCAACTAAGCA
AAAACAACACGGAACTCTCCGGCACATTGGAAGACATCGTCACGCGGACAAACCAACTTG
AAAGAGATGATAGCAAATATGATACTAACAGCGGAAACATTGAACTTTACAATCATGGTT
TAGAGAATGGATTGGATAAAGATCATGGCGATTTGGAAGCAATTGATGAAATAGCTTTGA
TTAAAGAATTCAATCACCAAATGGAGATGGAAAGCTCAAACAATCGAGCAGGAGTTTCAT
CGGTAGAGCCAAGCAGTATCAGACCGGGTCAGGATGCAGCTATAAACAATGAGACCGAGG
AACGAATTATCAGCCTGGACCACCACGTAAGAGAACTGATGGCCAAGATGGAAAATCAGA
TAACGACTACACGTGATTTGTCCACAAAGCTTACCCAGATCGAGCAAAGAATGATGCAGC
AAGAATTAAGGTGCTGTAACGGTTTGTACTATTGGAAAATAAGAGACTACAGCAGACTGC
GCCGTTCTGCTTCTGCTGGTGAATTACCTGTCCTCCACAGCCCAGGATTCTACACAAGCC
CTCAAGGTTACCGTATCTGCATTCGAGTCAACTTGGACGGAGTGGAAAGTGCACAGGGGA
CCCATCTTTCTTTATTTGTGCATTTAATGAAAGGTGAAAATGATGAACTTCTTAACTGGC
CCTTTGCAGGTGTTATAACTTTGACAGTAGTTAATCAGAGAGATTTACCTGAACAACGAT
CACACATATCTGAAACTCTTCATGCTCGCTCGAACCTGATGGCGTTCCAAAAACCAAGGA
CTGAACGCAATCAGAAGGGATATGGATACATCGACTTTTTCCCACTAAACATGATCGAGA
GCGAAGGGTTTATCAAAAATGATGCCTTGGTCATTAAGGCACAAGTTACTGTTGAGACAC
CTGCTGCTGGAACTTGAAGATCAAAGTCAAAACATTTTAAATACTGTAGAAATCTCACTG
AACAGAACTGTGATATTGTAGTGCCAGTATTCATGAATTGTACCAGAATTCTACTTATTG
AAATTTTAAGTGAAGGTGTGGAGATATGTGTTTTTTAGTTTTTGTTTCATCATGAGAGTG
CGAGCTTTTATTCATCTTTGTCTTATTCATTGCGCAGCTTATACTCAATTATTATTCATT
TTTAATATGAACGGTTATAAAGAATGTAGTATTTAAAGGAGTAATAAGTTTTCCTTGCAT
TTAATTATTTCATCAGTATAGTTGCAGATTAACATGTAAGTGTATCATACGACATTTTTC
TGTCACCTCCGTTTAATGTTAGTACTTCATTGAAGATGATTTTCTCAAACAGAAATGGTA
ATTACTTTCCTCTATTAGCAAAAACTGTCTCAATTACATAGGTTCAGTTATAAAATTGTC
ATACTCACATAGGGTGGCCAGCCAGTCCAGCTGTTGAGCACACTGCCTTCCGTCCGGCAA
ACACTTCGAGCCTGACGTTAATCTATGTTGTTATTCATGGTCTGACTAAAAAACTTATAT
AAATTACCTCATATGTAGCTGCAAATGAAGTCCTTCTTGGAAGCTGCTGTCGTTCTTGCT
ACATTATCTCATGCCACTGCTCTTCTCTCACCCTTTGCCTGTACCTTGTCATTCTAACCC
TGACCCTCCCAATCTGCATTGCCCATCCAAGATTTTTTGACTAAGTGAGAGAAGATGCGT
GCGAACTAACTTGTTCGTAGGGCAGTTTCTTCATTCTATGTTTTTGTTTTTCATATTGCC
CTTCCGTATTTTATAGTTCACTGTCGTATCATGTTATTTTATGATAATATATATATATAC
ATACGTTTCTAAAACTGAACTAGAGATTCTCAAAAGGTTACAACGATTAAAATCAGTGTC
ATTATTTATTAACATTTCACAGTTAATTACTTACACAGATCTGCTATACAATGTTTTTTT
TTGTGTTGCAGTGCAATATTAAATCATATAATGAAAAAATAAACTGTTTTGTATGGGAAC
TATTCCTATTTAGCCCCTGTTGAACTAACTGTATCTTGCAATTAATGATTAGATCGTTTT
AGTAATACACAGTAGGATACATGCTTGTGAATTCCTCCTAACCATAGCCGTGTGAACAGA
AAAGTTAAAAATCTATCTGGAGGCAAAAGAAAATTATAACAAGCTGAGGAAAAATCTAGG
ACGAACAAAAGTCCAGAATGCTAATACTGATCTAGTAAAAAAGATACAGAACTTGGTGTA
TTTGAACCAGCACACATCGAGCTATGATCTTATATTGGAACTGATTGGCCACGAACAGCC
GTGTACGGTGGCGGTGGATAGGATGGAGACGAATCTTCAAAAGGTTAAAAAAGTACTCTT
CTATGTTTGTTTGGTAAAGAATCTCCAGGAAGAAAGATGGAAAATCAGATGCATGCTCCA
TAAATATATAGTTTACAAATGCTTGTTCAGTACTTTATGCTAATGTACAAATAC
| PIRSF |
TNF_rcpt--assoc_TRAF (IPR012227) - T[7-556] 6.4E-117 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[22-133] 1.8E-29 - T[134-182] 1.1E-5 - T[183-242] 1.9E-6 |
| SMART |
Znf_RING (IPR001841) - T[41-78] 3.1E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[41-79] 11.737 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[56-65] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[100-170] 4.05E-6 - T[185-243] 2.88E-9 - T[399-552] 9.65E-40 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[148-231] 10.981 |
| Pfam |
Znf_TRAF (IPR001293) - T[175-233] 4.2E-6 |
| Gene3D |
TRAF-like (IPR008974) - T[363-554] 1.7E-59 |
| ProSiteProfiles |
MATH/TRAF_dom (IPR002083) - T[400-549] 24.635 |
| SMART |
MATH/TRAF_dom (IPR002083) - T[405-532] 2.8E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF3_HUMAN | 29.575 % | 210 | 8.58E-61 |
| TRAF5_HUMAN | 29.128 % | 196 | 7.82E-56 |
| TRAF6_HUMAN | 34.137 % | 293 | 7.69E-93 |