- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'Mooccu.CG.ELv1_2.S70...' >
- Transcript 'KH2012:KH.L55.3.v1.A...' >
- Clone 'cien46693' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S164.g07886.01.t
Possible name(s)
TRAF3; TRAF5; TRAF6
Gene model
Location
S164 [183,081 / 186,283]
Amino acid sequence
Length: 558
>Harore.CG.MTP2014.S164.g07886.01.p
MQMNSTSYRSELAPQATTTMQEGLEGYDYEFVPSLDNKHMCPICLLALRDPVQTECGHRF
CQPCISRSLEHQKKCPVDNDPLTTNQLFQDKYAHREVLDLKVKCNNKGCDFVSELRLIEN
HEEVCEMRKIPCKNMCGLWLLSQDAVFHEENQCPRRPVSCDVCSQTYPFIAEEQHKDECK
QHQPVKCPHCTHELKLYKLQSHITTECLQAPIKCVFERVGCQQELPRHSIKEHMEQSTQI
HLQYLLSTVSQLSKNNTELSGTLEDIVTRTNQLERDDSKYDTNSGNIELYNHGLENGLDK
DHGDLEAIDEIALIKEFNHQMEMESSNNRAGVSSVEPSSIRPGQDAAINNETEERIISLD
HHVRELMAKMENQITTTRDLSTKLTQIEQRMMQQELRCCNGLYYWKIRDYSRLRRSASAG
ELPVLHSPGFYTSPQGYRICIRVNLDGVESAQGTHLSLFVHLMKGENDELLNWPFAGVIT
LTVVNQRDLPEQRSHISETLHARSNLMAFQKPRTERNQKGYGYIDFFPLNMIESEGFIKN
DALVIKAQVTVETPAAGT
Nucleotide sequence
Length: 1,984
>Harore.CG.MTP2014.S164.g07886.01.t
ATATTTCCTTTTTGTATTTACTCATTATCAACTGCTCCAACATATAGTAGAAAAGTAACT
CATGACTATTAGGTACTTGGCGAGTCTAAAATGCAAATGAATTCGACATCGTATAGATCG
GAATTAGCTCCACAAGCAACCACAACAATGCAAGAGGGCCTGGAAGGATACGATTATGAG
TTTGTTCCAAGCCTCGATAATAAACATATGTGCCCTATATGTTTATTGGCATTGAGGGAT
CCTGTTCAGACGGAATGTGGACATAGGTTCTGTCAGCCTTGTATCTCTAGATCATTAGAG
CATCAAAAAAAATGTCCGGTGGACAATGACCCTCTCACAACCAACCAACTATTCCAAGAC
AAGTATGCTCATCGAGAGGTGTTAGATTTAAAGGTCAAATGCAATAACAAAGGTTGCGAT
TTTGTGTCAGAACTACGGCTTATAGAGAACCATGAAGAGGTGTGTGAAATGAGAAAAATT
CCATGTAAAAATATGTGCGGTCTGTGGCTTCTTTCACAAGACGCAGTTTTTCATGAAGAG
AACCAGTGTCCCCGGCGACCGGTGTCGTGCGACGTCTGCAGCCAAACTTATCCGTTTATA
GCCGAAGAGCAACACAAAGATGAATGCAAGCAGCATCAACCGGTGAAATGTCCTCATTGC
ACACATGAATTAAAATTGTACAAGTTACAATCTCACATAACCACAGAATGTCTCCAAGCA
CCAATAAAATGCGTATTTGAAAGAGTAGGATGCCAGCAAGAGCTACCACGGCACAGTATA
AAAGAACATATGGAGCAGTCGACTCAAATACATTTGCAATACTTATTAAGCACTGTCAGT
CAACTAAGCAAAAACAACACGGAACTCTCCGGCACATTGGAAGACATCGTCACGCGGACA
AACCAACTTGAAAGAGATGATAGCAAATATGATACTAACAGCGGAAACATTGAACTTTAC
AATCATGGTTTAGAGAATGGATTGGATAAAGATCATGGCGATTTGGAAGCAATTGATGAA
ATAGCTTTGATTAAAGAATTCAATCACCAAATGGAGATGGAAAGCTCAAACAATCGAGCA
GGAGTTTCATCGGTAGAGCCAAGCAGTATCAGACCGGGTCAGGATGCAGCTATAAACAAT
GAGACCGAGGAACGAATTATCAGCCTGGACCACCACGTAAGAGAACTGATGGCCAAGATG
GAAAATCAGATAACGACTACACGTGATTTGTCCACAAAGCTTACCCAGATCGAGCAAAGA
ATGATGCAGCAAGAATTAAGGTGCTGTAACGGTTTGTACTATTGGAAAATAAGAGACTAC
AGCAGACTGCGCCGTTCTGCTTCTGCTGGTGAATTACCTGTCCTCCACAGCCCAGGATTC
TACACAAGCCCTCAAGGTTACCGTATCTGCATTCGAGTCAACTTGGACGGAGTGGAAAGT
GCACAGGGGACCCATCTTTCTTTATTTGTGCATTTAATGAAAGGTGAAAATGATGAACTT
CTTAACTGGCCCTTTGCAGGTGTTATAACTTTGACAGTAGTTAATCAGAGAGATTTACCT
GAACAACGATCACACATATCTGAAACTCTTCATGCTCGCTCGAACCTGATGGCGTTCCAA
AAACCAAGGACTGAACGCAATCAGAAGGGATATGGATACATCGACTTTTTCCCACTAAAC
ATGATCGAGAGCGAAGGGTTTATCAAAAATGATGCCTTGGTCATTAAGGCACAAGTTACT
GTTGAGACACCTGCTGCTGGAACTTGAAGATCAAAGTCAAAACATTTTAAATACTGTAGA
AATCTCACTGAACAGAACTGTGATATTGTAGTGCCAGTATTCATGAATTGTACCAGAATT
CTACTTATTGAAATTTTAAGTGAAGGTGTGGAGATATGTGTTTTTTAGTTTTTGTTTCAT
CATGAGAGTGCGAGCTTTTATTCATCTTTGTCTTATTCATTGCGCAGCTTATACTCAATT
ATTA
| PIRSF |
TNF_rcpt--assoc_TRAF (IPR012227) - T[7-556] 6.4E-117 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[22-133] 1.8E-29 - T[134-182] 1.1E-5 - T[183-242] 1.9E-6 |
| SMART |
Znf_RING (IPR001841) - T[41-78] 3.1E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[41-79] 11.737 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[56-65] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[100-170] 4.05E-6 - T[185-243] 2.88E-9 - T[399-552] 9.65E-40 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[148-231] 10.981 |
| Pfam |
Znf_TRAF (IPR001293) - T[175-233] 4.2E-6 |
| Gene3D |
TRAF-like (IPR008974) - T[363-554] 1.7E-59 |
| ProSiteProfiles |
MATH/TRAF_dom (IPR002083) - T[400-549] 24.635 |
| SMART |
MATH/TRAF_dom (IPR002083) - T[405-532] 2.8E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF3_HUMAN | 29.575 % | 210 | 8.58E-61 |
| TRAF5_HUMAN | 29.128 % | 196 | 7.82E-56 |
| TRAF6_HUMAN | 34.137 % | 293 | 7.69E-93 |