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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S157.g05829.01.t

Possible name(s)

CRX; OTX1; OTX2

Gene model

Harore.CG.MTP2014.S157.g05829

Location

S157 [115,128 / 120,062]

Sequences

Amino acid sequence

Length: 545

>Harore.CG.MTP2014.S157.g05829.01.p
MCPTRLEMVCLHWSPVYSHCHLLGIATDFFSMSYLKSSHYAMNGLGLGPDMNLIHPGVTY
PGLQVHQGHKNMPFGAPPVYSTSRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVA
LKINLPESRVQPIAWRTLQNKLFRLFSRITANSYGGSVTSAVRVWACMYDGVGGVHVETG
NSQRPTGCRSYVRSWKLSSFATQVDLMISVQLYWLNQLLRLGKLVREIIVGLVWFKNRRA
KCRQQQQQLQQKQQHKSSGNNSTNSNSSSASSNSSTKKKSPPTTPTASSESEQSNHNPTS
VSPPFQQPIQQNKSSPSPSVSPSDQINHLGSVEQSTHGHMAHNNAHMPQLPTPTNGHNAA
NVTNIWSPAPVSPEPTSDTTVALVGSMSSLTGGVLPMSSNSSCMSVLPSSAIAHTHSPYG
LPTNSQVTSAGGYHQSYPSQSYFGTMEASYLPSMQFPTAASHGMSAAASMASQHHVNMHH
AATHPHSHHHGGAQSTSPHAQFMSQSAYAYPHHHSSSTGLNSYSNAGVDCLDYKDQTPSW
KFQVL

Nucleotide sequence

Length: 1,638

>Harore.CG.MTP2014.S157.g05829.01.t
ATGTGCCCAACGCGATTGGAAATGGTTTGTTTACATTGGAGCCCAGTCTATTCTCACTGC
CATTTACTTGGTATTGCAACTGATTTCTTCAGTATGTCTTATCTGAAATCCTCACACTAC
GCCATGAACGGACTTGGTCTTGGACCTGATATGAATCTCATTCACCCAGGCGTGACTTAT
CCAGGATTGCAAGTGCATCAGGGTCACAAAAACATGCCGTTCGGCGCACCACCAGTTTAC
AGCACATCCAGAAAACAAAGAAGAGAAAGAACTACGTTTACTCGCGCTCAACTTGATATA
CTGGAAGCCCTTTTTGCTAAGACACGATACCCCGATATTTTCATGAGAGAAGAAGTGGCA
TTAAAAATCAATCTGCCCGAATCCCGAGTTCAGCCCATTGCCTGGCGAACGTTACAAAAC
AAACTGTTCAGATTGTTTAGTAGAATTACAGCGAATTCGTACGGCGGGTCAGTTACGAGT
GCGGTACGAGTTTGGGCGTGTATGTACGACGGTGTTGGTGGTGTACATGTCGAAACTGGT
AATAGCCAGCGGCCAACTGGCTGTCGATCGTACGTGAGAAGCTGGAAGCTCAGTTCGTTT
GCAACACAGGTGGATCTCATGATATCAGTACAATTGTACTGGTTGAACCAACTGCTTCGT
TTGGGAAAACTAGTAAGGGAAATAATAGTGGGGCTGGTTTGGTTCAAGAATCGTCGGGCT
AAATGTAGGCAACAACAGCAACAGCTTCAACAAAAGCAACAACACAAATCGAGCGGCAAC
AACAGCACCAACAGCAACAGCAGCTCCGCTAGCTCGAATTCGTCAACGAAGAAGAAAAGT
CCTCCGACAACACCGACAGCCAGCAGCGAATCTGAACAATCAAATCACAACCCTACAAGC
GTGAGCCCACCGTTTCAACAACCAATCCAACAAAACAAAAGCTCACCTTCACCGAGCGTT
TCTCCTAGTGATCAAATAAACCATTTGGGATCAGTGGAACAATCAACACACGGACACATG
GCTCATAACAACGCGCATATGCCTCAATTACCGACACCCACTAATGGACACAATGCCGCT
AACGTTACCAACATATGGAGCCCAGCGCCAGTGTCTCCAGAGCCGACCAGTGATACCACC
GTTGCACTCGTTGGCTCGATGTCGTCTCTGACCGGAGGCGTGTTACCCATGTCGTCCAAT
TCGTCCTGTATGTCAGTTCTGCCATCAAGCGCTATCGCTCACACTCATTCCCCGTATGGA
TTGCCGACAAACTCTCAAGTTACATCTGCTGGTGGTTATCATCAGTCTTATCCGAGTCAG
TCTTACTTTGGCACAATGGAAGCGTCCTATCTTCCATCGATGCAGTTCCCAACGGCAGCG
AGCCACGGTATGTCCGCTGCGGCATCGATGGCTTCTCAACACCACGTCAATATGCACCAT
GCCGCCACTCATCCTCATTCACACCATCACGGCGGTGCTCAGTCTACTTCCCCTCATGCT
CAGTTCATGTCTCAAAGTGCTTACGCCTATCCCCATCATCACAGCTCGTCAACCGGACTG
AACAGTTATTCTAACGCAGGCGTAGACTGTCTCGACTACAAGGATCAAACGCCATCGTGG
AAGTTTCAGGTTTTGTGA

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[72-131] 5.13E-14
ProSiteProfiles
Homeobox_dom (IPR001356) - T[84-131] 11.11
SMART
Homeobox_dom (IPR001356) - T[86-249] 4.5E-12
CDD
Homeobox_dom (IPR001356) - T[87-131] 3.54975E-14
Pfam
Homeobox_dom (IPR001356) - T[87-131] 2.3E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
OTX2_HUMAN 65.347 % 126 1.1E-32
OTX1_HUMAN 67.327 % 134 5.91E-35
CRX_HUMAN 54.902 % 106 1.71E-25