- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S155.g01891.01.t
Possible name(s)
LRP5; LRP6
Gene model
Location
S155 [25,709 / 42,400]
Amino acid sequence
Length: 1,738
>Harore.CG.MTP2014.S155.g01891.01.p
MCDFCHSLIWLIFGYLAVTCLHSDAVASDRAQGRNPCGDNNGGCSHLCLISPDVPHYSCA
CPTGVLISADQKTCKDGPESILLLARRPDIRIISLDTPDFTDIVLPLQNVQMAVAIEYDP
VDDLVYWTNNVKKAIFRATLDGKKEERIISDELEQCDGIAIDWVARNLYWAEAGRNYIAV
SRLNGTSRKYLIEDGISEPRAIILDPAQGQFYWSDWGKYPKIERASLDGSDRQVFVNTSI
RWPNGLALDYENKLLYWAEAHLDKIEVIGLNGMGRRVLLKEKLPHIFGFSLLNGYLYWSD
WQKRKVERMLVNDTKSRHSMIDELSDLMGIKATSVNPFPATNPCGKNNGGCSHLCLYTPK
GARCNCPNGLELLSDMKNCIEPEAFLVFALSEEVRRISLETAPGGPIEIPFGDSVGVTNL
DVSVHDETIYWTDNVQMLIYKAFMNGTGMKSIIDPGVSVLEGIAVDWLGRNIYWADSLSN
RIEMARLDSNIRRPVLWQDLQQPRSIAVDPVNGYIYWTEWGGQPRIRRAQMDGSDVKTLL
GNGELGRAHSLTIDYADQRLYWVDLDGNEIVSSNMTGGDRKQITETNENHISRISLFNEF
IYWTRRSSIERANKTTGANRVIIQPSIDDPREDILDMLVYHTSRQSGVSACSFDNGGCEH
LCLAIPGGTHKCNCPAHYKLNKDNVTCTAPDNFILFHQERYISRIVLEHGITGAQSPDTV
LPIRGLVNVCAIDYDPVGDFLYWIDCSLGEIKRSRMNGTEVTTILENKEHSLRYPYDLSI
EPYGRMLFWSDSSNNSINVMTLDGKVIGTVVSNSVMTVAQMTSVTVHPRKIAVHSKNGFL
FFSSVCTDATACRVKILRCTLDGSDCLVLFNKGLKKVSGITVDEDKLYWTDEELQKIHSS
NLDGSSHAPFVDSELGKPVGITIFGPNVYWFDQTADGGQIKSVRKSGKDPKIIQGMIRDL
KGIVGVTNIKKKELDNHPCTNNNGRCSHICISNEDGTTRCSCPNHLTLEDFKCAAVSPHR
EDTMLPIYNAISYNIYNGQILRLIEAWRDAQPNNEIDELTVVVDGRVETPPCLPNQFTCA
SGDVRCIPGGWRCDNKDEPECTDGSDEIGCPACGSADTFRCGTGMGGTEEETARAADQLS
IFWGVLSELDTGQCIPLSARCDGKPDCLDESDENNCYCKSNEFTCSNRQCILASEKCDGV
PNCHDESDESTSICRENSSQPSNQDSTLIIVVIVAVCSTVIIAVIIFSFRKRKSRNTSAN
PVVWYNSRDCIEGRISVNVQMTSHGDHLAQVNQHGLQSSHPIKPPKKVTGGKSSTASVKV
SIVPTNSNPGTHVVSAQVPYGRPPHPGVGVPTYGSIPPYGNFAMGDHVVMPGDPHLMIYE
RPNITGASSSSSSTRTNLTKQFPPTLNPPPSPATDRSGSKSTGDCVYLSDSPSNTVSYCR
CRSGHGHRRSHHHRNLVHAPPPPTPCTSDTCDDFDNSSRRSKPSSPPPPYCHCCFYYHHQ
CMGYNGYHPYPPPSSYHSSHHSYHTPPLIPGDAHPNSSSSGSSQHVLAPACPMQCYQRPS
SSSGRRHPSSGRNSRNSSANPPRYHNVMSSDLNSDSDPFAPPPTPRSQYMSDCCYTHDEA
DDNPDDESARFVNRVDEETDAGDQEDASKNLLESEKSGETVIKTSDITKTEASLKGEEDD
DDDDDNDHEIPEDGHLDQEEQGEENVTEHDALLSPDSTQDMHYHPPYNPPPSPVTDSS
Nucleotide sequence
Length: 5,217
>Harore.CG.MTP2014.S155.g01891.01.t
ATGTGCGACTTTTGTCATTCGCTGATTTGGCTAATCTTTGGCTACTTAGCTGTCACCTGT
CTACATTCCGATGCCGTAGCATCAGATCGTGCCCAAGGCCGCAATCCGTGTGGAGATAAC
AACGGTGGCTGCTCTCATCTATGCCTCATATCACCAGACGTTCCGCATTACAGCTGCGCT
TGTCCGACCGGTGTGTTGATTAGCGCAGACCAGAAAACATGCAAAGACGGTCCCGAATCG
ATATTACTCCTCGCCCGTCGCCCCGACATACGGATCATATCGCTGGACACGCCTGACTTC
ACAGACATTGTCTTGCCTCTGCAGAATGTGCAGATGGCTGTCGCCATTGAGTACGACCCT
GTCGACGACCTTGTGTATTGGACCAACAATGTTAAGAAAGCCATATTCAGAGCTACCTTG
GATGGAAAAAAAGAGGAAAGAATTATTTCTGATGAACTAGAGCAGTGTGACGGCATCGCC
ATCGACTGGGTGGCACGCAATTTATACTGGGCCGAGGCCGGACGCAATTACATCGCCGTG
TCCAGGTTGAACGGCACATCGAGAAAATATCTGATTGAAGATGGAATTAGTGAGCCAAGG
GCCATTATACTCGACCCAGCACAAGGCCAGTTCTACTGGAGCGATTGGGGAAAATATCCA
AAGATTGAAAGAGCATCGCTCGATGGTTCGGACAGACAAGTTTTCGTTAATACCTCCATC
AGATGGCCTAATGGTTTGGCCCTGGATTACGAAAATAAGTTGCTGTACTGGGCTGAAGCT
CATCTAGATAAAATCGAAGTCATTGGACTGAACGGCATGGGACGAAGGGTGCTTCTGAAA
GAAAAATTACCTCATATATTTGGTTTCAGTCTGCTCAATGGTTATTTGTATTGGTCCGAC
TGGCAAAAGCGCAAGGTGGAAAGAATGCTCGTGAACGATACAAAGTCACGGCACTCCATG
ATAGACGAGCTGTCAGATCTGATGGGAATAAAAGCTACCAGCGTCAATCCGTTTCCCGCA
ACTAACCCCTGCGGTAAGAACAATGGAGGCTGCTCACACCTTTGCTTATATACTCCCAAG
GGTGCTAGATGTAACTGTCCGAATGGGCTCGAGCTCCTCTCTGACATGAAGAATTGCATC
GAGCCAGAAGCGTTTCTTGTGTTCGCGTTATCCGAGGAAGTTAGGAGGATCTCGCTCGAG
ACTGCTCCCGGTGGACCCATTGAAATCCCATTCGGAGATAGCGTCGGAGTTACGAACTTG
GATGTGTCTGTGCATGATGAAACAATCTACTGGACAGATAATGTTCAAATGCTTATATAC
AAGGCATTCATGAACGGCACCGGTATGAAGAGTATCATCGACCCTGGGGTCAGCGTGCTC
GAAGGCATAGCCGTCGATTGGCTAGGTCGAAACATCTACTGGGCGGATTCTCTTTCCAAC
CGTATCGAAATGGCGAGACTCGATTCCAACATACGTCGTCCGGTACTCTGGCAAGACTTG
CAGCAGCCAAGAAGCATTGCGGTAGACCCAGTTAATGGATACATTTACTGGACAGAGTGG
GGAGGCCAACCGCGCATCAGACGTGCCCAGATGGACGGTTCGGACGTTAAAACCTTGCTT
GGGAACGGGGAACTTGGCCGTGCGCACTCTCTCACTATCGATTACGCCGATCAGAGATTG
TACTGGGTGGATCTGGACGGCAACGAAATAGTTTCGTCCAACATGACGGGCGGGGACAGG
AAACAGATCACGGAAACGAATGAGAATCACATTTCAAGAATTTCGCTTTTTAACGAGTTT
ATATATTGGACCAGGAGAAGCAGCATTGAGAGAGCCAACAAAACTACGGGAGCTAATCGG
GTAATTATTCAACCATCCATCGACGATCCCCGTGAAGATATCCTTGACATGCTGGTTTAT
CACACGTCCAGGCAGTCCGGAGTCTCGGCATGCTCTTTCGACAACGGCGGCTGCGAACAC
CTGTGTCTAGCTATACCGGGCGGAACCCACAAATGCAACTGTCCGGCCCACTACAAACTC
AACAAGGACAACGTCACGTGCACCGCCCCGGACAATTTCATATTGTTTCATCAGGAAAGA
TACATCAGCAGAATCGTTTTGGAGCACGGTATTACGGGAGCTCAAAGCCCAGACACCGTT
TTACCCATCAGAGGTTTGGTTAATGTTTGCGCGATAGACTACGACCCCGTCGGGGACTTC
CTGTATTGGATAGACTGCAGCTTGGGTGAAATAAAGCGTTCTAGGATGAACGGAACAGAG
GTTACAACGATTTTGGAAAACAAGGAACACAGCTTGCGTTACCCTTACGACTTGAGCATC
GAGCCATATGGAAGAATGCTTTTTTGGTCTGATAGCAGCAATAATTCAATCAACGTCATG
ACTCTCGATGGCAAAGTGATCGGCACGGTCGTCAGTAATTCCGTTATGACCGTAGCTCAA
ATGACCTCTGTCACAGTACACCCAAGGAAGATAGCAGTGCATTCAAAGAATGGGTTTTTG
TTCTTCAGCAGCGTGTGCACTGATGCCACGGCTTGTCGTGTAAAAATTCTTCGCTGTACC
TTGGACGGCTCCGACTGTCTCGTCCTATTCAACAAGGGCCTGAAGAAAGTATCTGGGATC
ACCGTTGATGAGGACAAGTTGTACTGGACCGATGAAGAACTGCAAAAGATTCATTCAAGT
AATCTTGATGGCAGTTCCCATGCACCGTTCGTGGATTCTGAGCTAGGAAAGCCAGTTGGA
ATAACGATATTCGGGCCCAATGTGTATTGGTTTGATCAGACGGCTGATGGCGGGCAAATC
AAGAGCGTCAGGAAGTCGGGCAAAGATCCAAAGATCATTCAAGGAATGATAAGGGATCTC
AAGGGAATAGTCGGTGTTACGAACATAAAGAAAAAAGAACTCGACAATCATCCATGTACC
AACAATAACGGCCGGTGCTCTCACATCTGCATAAGCAACGAAGATGGGACAACCAGATGC
TCCTGTCCGAACCACCTAACGTTGGAGGATTTTAAATGTGCAGCCGTGTCGCCTCATAGA
GAAGACACAATGCTACCAATATACAATGCGATATCCTACAATATCTACAATGGACAGATA
TTACGGTTGATTGAAGCGTGGCGTGACGCACAACCCAATAATGAAATTGATGAGTTAACA
GTTGTTGTAGATGGCAGAGTGGAAACACCTCCTTGCCTCCCGAATCAATTCACCTGCGCC
TCAGGAGACGTCAGATGCATTCCTGGAGGCTGGAGGTGCGACAACAAAGATGAACCCGAA
TGCACAGACGGCTCGGACGAGATCGGCTGCCCGGCGTGCGGCTCCGCAGACACGTTCCGA
TGCGGGACCGGTATGGGAGGCACTGAGGAAGAGACCGCTAGGGCTGCGGATCAACTGAGC
ATATTCTGGGGCGTCCTGTCGGAGCTGGATACGGGTCAGTGCATCCCTCTCTCTGCAAGA
TGCGACGGTAAACCAGATTGCTTGGATGAATCTGACGAGAATAATTGCTACTGCAAATCG
AACGAATTTACCTGCAGCAACAGACAGTGTATTCTGGCCAGCGAGAAATGCGACGGCGTC
CCTAACTGTCATGACGAATCTGACGAGTCAACGAGCATTTGCAGAGAAAATTCCTCGCAA
CCATCGAACCAAGACTCTACTCTTATCATAGTTGTGATAGTCGCCGTTTGCAGCACAGTC
ATTATCGCTGTCATAATATTCAGCTTCAGGAAACGAAAGTCTCGTAACACCAGCGCAAAC
CCGGTGGTATGGTACAATTCCCGCGACTGCATAGAAGGTAGGATAAGCGTGAACGTACAG
ATGACCTCTCACGGCGACCACTTGGCTCAGGTCAATCAGCACGGTCTGCAGTCGTCCCAC
CCGATCAAACCCCCGAAAAAGGTCACAGGAGGAAAGTCTTCCACCGCATCCGTCAAAGTG
TCGATCGTGCCCACGAACTCTAACCCCGGGACTCACGTCGTCAGTGCACAAGTGCCGTAT
GGCAGACCACCCCATCCCGGCGTGGGTGTCCCGACTTATGGCTCCATACCTCCGTATGGT
AATTTTGCCATGGGCGACCATGTTGTGATGCCGGGCGACCCTCACCTCATGATTTATGAG
AGACCGAATATCACCGGGGCTTCTTCGAGTAGTTCCAGCACCAGGACCAATCTCACTAAA
CAATTTCCCCCTACTCTCAATCCGCCTCCGTCTCCTGCCACTGACAGATCCGGATCGAAA
AGCACTGGAGATTGTGTCTATTTGTCGGACAGTCCATCCAACACAGTCTCCTACTGCAGA
TGTAGAAGTGGACATGGGCACAGGCGGTCACACCATCATCGAAACCTTGTGCACGCACCG
CCGCCACCAACGCCATGCACGTCAGACACTTGCGACGATTTCGACAACAGCAGCCGGAGG
AGCAAGCCGTCTTCCCCTCCGCCTCCGTATTGCCACTGCTGTTTCTATTACCATCATCAG
TGCATGGGTTATAACGGATACCATCCATACCCACCTCCTTCCTCTTACCATTCGTCACAC
CACAGCTACCACACCCCTCCTTTGATTCCGGGGGATGCCCATCCGAATTCTTCATCGTCC
GGTTCGTCGCAGCACGTCCTGGCCCCCGCTTGCCCTATGCAGTGCTACCAAAGGCCTTCG
TCATCTTCGGGCAGACGGCACCCTTCATCCGGCAGGAATTCCAGAAACTCATCGGCTAAC
CCGCCCCGGTACCACAACGTCATGTCGTCAGACTTGAACTCTGACTCTGACCCCTTCGCC
CCTCCTCCGACTCCGCGTAGCCAGTACATGTCGGATTGCTGTTACACTCACGACGAGGCG
GACGACAACCCTGATGATGAATCAGCCAGGTTTGTCAACCGGGTGGATGAGGAGACGGAT
GCAGGAGATCAGGAAGACGCATCAAAGAATCTTTTAGAATCCGAAAAATCGGGTGAGACC
GTAATCAAAACATCAGATATCACAAAGACTGAAGCAAGTCTTAAAGGAGAGGAAGATGAT
GATGACGATGATGATAATGATCATGAAATCCCTGAAGACGGACATTTAGATCAGGAGGAA
CAGGGTGAGGAGAACGTGACAGAGCATGACGCTTTGTTATCGCCTGATTCCACTCAGGAT
ATGCATTATCATCCTCCTTACAACCCACCTCCGTCTCCAGTAACCGATTCATCTTGA
| SMART |
EGF-like_dom (IPR000742) - T[36-75] 0.9 - T[343-380] 0.026 - T[650-688] 0.097 - T[978-1014] 2.5 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[72-380] 1.1E-121 - T[381-676] 3.7E-95 - T[677-1021] 8.5E-84 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[103-145] 1.0E-4 - T[146-188] 2.4E-12 - T[189-232] 3.6E-12 - T[233-275] 8.6E-13 - T[276-316] 1.3E-4 - T[408-449] 0.81 - T[450-492] 1.9E-9 - T[493-536] 8.9E-12 - T[537-580] 2.4E-5 - T[581-619] 85.0 - T[719-761] 3.9E-6 - T[762-807] 0.0011 - T[818-866] 10.0 - T[867-907] 1.6E-7 - T[908-950] 19.0 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[123-165] 13.126 - T[166-208] 14.31 - T[209-252] 16.445 - T[253-295] 10.922 - T[296-339] 5.724 - T[427-469] 12.662 - T[470-512] 14.542 - T[513-557] 13.614 - T[558-600] 9.46 - T[601-639] 5.097 - T[739-784] 11.943 - T[785-830] 9.576 - T[838-883] 4.796 - T[885-927] 13.289 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[124-163] 2.7E-5 - T[166-206] 4.8E-8 - T[212-250] 2.0E-9 - T[470-510] 3.9E-6 - T[513-555] 1.5E-6 - T[885-924] 7.2E-7 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[1069-1111] 2.09E-7 - T[1151-1178] 4.32E-7 - T[1177-1214] 6.54E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[1071-1110] 2.1E-8 - T[1151-1176] 2.8E-7 - T[1178-1210] 5.8E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[1071-1111] 12.2 - T[1112-1177] 11.75 - T[1177-1215] 11.725 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[1071-1112] 4.1E-9 - T[1146-1176] 0.014 - T[1177-1216] 9.7E-10 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[1072-1110] 3.94913E-10 - T[1150-1176] 3.19873E-8 - T[1178-1209] 1.05782E-8 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[1084-1105] 1.6E-11 - T[1152-1173] 1.6E-11 - T[1188-1209] 1.6E-11 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[1190-1214] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 35.939 % | 636 | 0 |
| LRP6_HUMAN | 40.355 % | 1053 | 0 |
| LRP5_HUMAN | 45.525 % | 983 | 0 |