Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S14.g10279.01.t

Possible name(s)

RRP7A

Gene model

Harore.CG.MTP2014.S14.g10279

Location

S14 [457,189 / 458,062]

Sequences

Amino acid sequence

Length: 290

>Harore.CG.MTP2014.S14.g10279.01.p
MARERINKTNMASRMEAPPGFKCLVIKFDKTCKFGHTLFYKPNQTRTEDTSKPKLRTLLV
LNVPPYCNKESLSRIFSLKFGDVENVILQKKITNDATEFVQKPTVKDLSLDDEKYFKSED
VKGFKLAFVIFSDPASVTRAAEYETNEKPCIISTRACPVKVGMGKWIEEYCDSIPDKNLQ
VNIDLYMSKYDTAHTRAEEKEEETKDAPDEEGWIKVSRKGKHPVVPRTEANELKAKSREK
MKRKQKELINVYAYQIRESKREKIAELRRKFEEDKVRIQSMRQSRKFQPF

Nucleotide sequence

Length: 873

>Harore.CG.MTP2014.S14.g10279.01.t
ATGGCGCGCGAGCGCATAAACAAAACAAACATGGCCTCGCGCATGGAAGCTCCACCTGGT
TTCAAATGTTTGGTTATAAAATTCGATAAAACGTGCAAATTTGGGCACACACTTTTCTAT
AAGCCGAACCAAACTCGAACCGAAGATACGTCTAAACCTAAACTCCGTACTTTACTAGTT
TTGAACGTTCCGCCGTACTGCAATAAGGAAAGTTTGAGTCGAATTTTTTCGCTGAAGTTC
GGGGATGTCGAAAACGTTATTTTACAGAAAAAAATTACTAATGACGCTACGGAATTCGTT
CAGAAACCGACGGTGAAGGATTTATCGCTTGATGACGAGAAGTATTTCAAATCTGAGGAC
GTTAAGGGATTCAAATTGGCGTTTGTTATATTTTCGGATCCTGCATCAGTAACCAGAGCA
GCTGAATACGAAACGAATGAGAAACCCTGCATCATTTCTACAAGAGCTTGCCCAGTTAAA
GTGGGAATGGGAAAATGGATCGAGGAATATTGCGATTCGATACCAGACAAAAACCTACAG
GTCAACATCGACCTTTACATGTCTAAATATGACACAGCCCACACCAGGGCAGAAGAGAAG
GAAGAAGAGACAAAAGATGCTCCTGACGAGGAGGGCTGGATCAAGGTGAGCAGGAAAGGA
AAACATCCAGTTGTGCCGAGGACAGAAGCGAATGAACTTAAGGCAAAATCACGGGAAAAA
ATGAAAAGGAAACAAAAAGAACTTATTAACGTGTATGCGTATCAGATTAGAGAGTCGAAG
CGGGAAAAGATCGCTGAACTGCGAAGAAAATTCGAAGAAGACAAAGTAAGAATTCAATCG
ATGAGACAATCACGGAAATTTCAACCTTTCTAG

InterProScan

PANTHER	RRP7 (IPR024326) - T[10-290] 3.9E-63
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[46-91] 2.17E-7 - T[125-147] 2.17E-7
CDD	Rrp7A_RRM (IPR034890) - T[56-170] 9.1322E-33
ProSiteProfiles	RRM_dom (IPR000504) - T[56-166] 8.876
Pfam	RRP7 (IPR024326) - T[162-290] 1.9E-32

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RRP7A_HUMAN	43.369 %	204	1.15E-64
RRP7B_HUMAN	54.808 %	106	4.21E-29