- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S14.g07712.01.t
Possible name(s)
NCL; PABPC4; SART3
Gene model
Location
S14 [425,137 / 432,539]
Amino acid sequence
Length: 943
>Harore.CG.MTP2014.S14.g07712.01.p
MEVDDKEDTNEVATEEATKDENVSKDSDDDDEMDSKNEDILQKLNEKLSTSPYDYQSHLD
LITQLRKMGELEKLREARTKMAAIFPLTTAIWLEWIEDERKFTEGEADDTRIVEVFEKAV
KDYICPDIWFEYVQFAMGWIGTEDGQQKIREIMERALTAVGIHVVSGAMLWDTYREFENT
VLMTLQPAPGSVPSTIEQEKINTQIKRLKSVFRRQLMVPLLDMNNTLLEYSRWVSEDLDA
GMQKSFEQSLKKLNELQKYEKALLISSPPELSEYQKYIDYEKKCGDPIRVQCIYERAISD
HCLDSELWIQYLDYLVRHLKHSNLVLEVHHRSVRNCPWTARLWVLYMIELERKDTPQTEM
KTVFEEALAAGFMTAYEYFDLWRTRCEQLRRRLNTGDNDAQGKEALRECFVRATDHLINT
VNPAFNSIGDANYTMWTYYAKCEASCLGDKEKAVKVLEVLFADMPIARKKYLIWLEYYNI
ERLYGGDDKLEQCRSILRRAVQNCGIVPDDGVNGKSDAEKACETLMDFEREFGTLDDYDE
SLKRVDAKLFRIKKRWDQLESAAAQSARDRNQNRNKKKTNARDAGRKRKYPEDTSSSRGE
QNSSYEKFSKRPRQAEGGQSPRRDGFKAPTGLPARYSKTTASPTRTAATSEALTTSTPPP
GFKSPPPPGFKPAPDASMDSNNNPNQGQIKDRPGSSLEESKRTVFISNLDFKTPNVEEKL
RSIFCDCGKIVEVRIAKSNTGKFRGFCFMLFEDAVAAQKALLLDRQAIDNRPMYVSPHVD
KNKNPDSKIFRYNTGMEKHKLFISNVSLNTTRETLEKEFSLHGKLTNVRIVTNRSGKPKG
IAYVEYENQSDASQAVMKMDMKEIDGSTIEVAISNPPSRRQDKDQKDRFLGGRGRGRTQL
SNFRSSARKPGDMENGTNPDEAEPSTSSGGLSNKDFAAMLLKK
Nucleotide sequence
Length: 3,324
>Harore.CG.MTP2014.S14.g07712.01.t
GAGATACACATGGCCGAGCATGGACGTTTTTGCAATGTGACAAAACGTCTCCTTTGAATT
ATTGTTGTTGCCTCGACCTTGTCAATATTGTTCTGTTTTCCTGGAAGGAATTTCCTTTAT
TTACACTGATTAATTATTCCTTCCTGTATATGATTGTTTTCCGGGTCCCTGGTAGAAAAA
ATAATTATTAAACATGGAGGTAGACGATAAGGAAGATACAAATGAAGTTGCAACCGAAGA
AGCGACTAAGGATGAAAATGTGTCGAAAGATTCTGACGATGATGACGAAATGGATTCAAA
AAACGAAGATATTCTACAAAAATTGAATGAAAAGCTTTCGACTTCACCCTATGACTATCA
GAGTCACCTTGATCTTATCACACAATTACGCAAAATGGGAGAGTTGGAAAAACTGCGCGA
AGCTCGTACAAAGATGGCTGCAATATTTCCTCTTACAACGGCCATCTGGTTGGAATGGAT
TGAAGATGAGAGAAAGTTTACTGAGGGTGAAGCAGATGACACTAGGATTGTTGAAGTCTT
TGAAAAAGCTGTCAAAGATTATATATGTCCTGATATTTGGTTTGAGTATGTACAGTTTGC
AATGGGATGGATAGGTACTGAAGACGGGCAACAAAAAATTCGTGAAATTATGGAGAGAGC
TTTGACTGCAGTCGGTATTCATGTTGTAAGTGGAGCAATGCTATGGGACACCTACAGAGA
ATTCGAAAACACTGTCTTAATGACATTGCAGCCTGCTCCTGGGAGTGTACCTTCAACAAT
CGAACAGGAAAAGATAAACACTCAAATTAAGCGATTGAAATCTGTGTTTAGAAGACAACT
TATGGTTCCTTTGCTTGATATGAATAACACTCTGCTGGAATACAGTCGCTGGGTCTCCGA
AGATCTCGACGCTGGAATGCAAAAGTCTTTCGAACAATCTTTGAAAAAACTGAATGAATT
GCAAAAATACGAGAAAGCTTTGTTGATTTCCTCGCCTCCAGAGCTGTCTGAATATCAAAA
GTACATAGACTACGAGAAAAAATGTGGCGATCCTATTCGAGTGCAGTGCATATATGAACG
TGCCATCAGTGACCACTGTCTCGATTCTGAGCTGTGGATTCAATATCTTGACTATTTAGT
CAGGCATTTGAAGCACAGCAACCTAGTGCTTGAAGTCCATCACAGATCGGTACGGAACTG
CCCATGGACCGCTCGCCTCTGGGTTTTATACATGATAGAATTGGAGAGGAAGGACACTCC
ACAGACTGAGATGAAAACGGTATTTGAGGAAGCCCTGGCTGCAGGTTTTATGACAGCGTA
TGAATATTTTGACTTGTGGAGGACGAGGTGCGAGCAGCTACGACGTCGTTTGAACACCGG
GGATAACGATGCACAGGGAAAAGAAGCACTGAGAGAATGTTTTGTAAGAGCAACTGACCA
TCTGATAAACACAGTCAACCCAGCATTCAATAGTATTGGTGATGCCAACTATACAATGTG
GACCTACTACGCGAAGTGCGAAGCTAGTTGCCTTGGCGACAAAGAAAAAGCCGTGAAGGT
ATTGGAAGTGCTATTTGCAGATATGCCAATCGCCAGGAAGAAGTATCTCATTTGGTTGGA
ATATTATAATATCGAAAGGCTCTATGGTGGTGATGATAAATTGGAGCAATGCAGATCGAT
ATTAAGAAGAGCTGTTCAGAATTGCGGGATAGTTCCGGATGATGGCGTTAATGGAAAGTC
AGATGCAGAGAAAGCTTGTGAAACTTTGATGGATTTTGAAAGAGAATTTGGCACTTTGGA
TGACTATGACGAATCGCTGAAGCGCGTCGACGCAAAATTGTTCAGAATCAAGAAGCGTTG
GGATCAGCTGGAATCGGCTGCTGCTCAGTCCGCGCGGGATAGAAACCAGAACAGGAACAA
GAAAAAAACGAATGCGAGAGACGCGGGAAGGAAGCGAAAATATCCAGAAGATACTAGTAG
TTCTCGGGGTGAGCAGAATTCCAGCTATGAGAAGTTTTCGAAACGTCCCAGACAAGCAGA
AGGTGGTCAGTCTCCTCGTAGAGATGGATTTAAAGCTCCAACAGGTCTTCCTGCAAGGTA
TTCAAAAACAACAGCTTCACCAACAAGGACTGCTGCAACATCAGAAGCTCTAACAACTTC
TACTCCTCCACCTGGTTTTAAAAGTCCGCCACCTCCAGGTTTCAAACCTGCACCAGATGC
TTCAATGGATTCAAATAATAATCCGAACCAAGGGCAAATTAAGGACAGGCCTGGCTCCTC
TCTCGAAGAATCTAAAAGAACTGTGTTCATAAGCAATCTTGATTTCAAAACTCCGAACGT
TGAGGAAAAACTGAGATCCATTTTCTGCGACTGTGGTAAGATAGTCGAAGTACGTATCGC
TAAAAGCAACACCGGAAAGTTCAGAGGTTTTTGCTTCATGCTGTTTGAAGATGCTGTTGC
CGCGCAGAAAGCATTGCTGTTAGATCGTCAGGCAATTGATAATCGGCCAATGTATGTCTC
CCCTCACGTTGATAAAAACAAGAATCCTGATTCTAAGATTTTCAGATACAATACTGGAAT
GGAAAAGCACAAATTGTTCATTTCTAATGTGTCTTTGAACACAACGCGAGAAACATTGGA
AAAAGAATTTTCTCTGCACGGAAAATTGACTAACGTCCGGATCGTCACTAACCGTAGCGG
AAAACCCAAGGGTATCGCTTATGTGGAATATGAGAATCAGTCTGATGCTTCCCAGGCAGT
AATGAAAATGGATATGAAGGAGATTGATGGTTCTACGATTGAGGTAGCTATCAGTAATCC
CCCATCAAGAAGGCAAGACAAGGACCAGAAAGATCGTTTTCTAGGAGGGAGAGGTCGTGG
TCGAACTCAGCTGAGTAATTTTAGAAGCTCTGCGAGAAAGCCTGGTGATATGGAAAACGG
AACGAACCCAGATGAGGCGGAACCTTCCACGTCATCTGGTGGCCTAAGCAATAAGGATTT
TGCCGCCATGTTGTTAAAAAAATGAAACAGTTATGGTGTCATGGTGAAAAGGCTTCTGTA
TACTTTGGATTGAAAGGGTATTGTAACCTTCAATTTGAGATTGGATTGGAGAAGAATTCT
ACATTCTGTTGTCCAGCTGATCGAGTATTCCGTTGCATATATATGATTTTTAACTTGCAA
CACTTTACTTCTTTTTTTACTTCGTGAACATTGCCTTGAAAATCTTGGCAAACTTCTTAC
TTTTTGTTCTTCTCTGTTGGTCTTGATCATGGAACATAGTTTTGTTCATTGGAATGATTT
CGAAAGAAAGGTGGTTCCATCGAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[44-246] 3.0E-43 - T[268-579] 2.5E-36 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[47-546] 2.69E-50 |
| SMART |
HAT (IPR003107) - T[69-101] 30.0 - T[107-138] 0.11 - T[144-180] 41.0 - T[285-317] 0.008 - T[320-353] 530.0 - T[448-483] 140.0 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[670-788] 2.2E-20 - T[791-909] 3.5E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[695-784] 6.18E-20 - T[797-904] 1.22E-24 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[702-780] 15.289 - T[799-876] 17.268 |
| SMART |
RRM_dom (IPR000504) - T[703-776] 2.9E-14 - T[800-872] 1.4E-20 |
| CDD |
SART3_RRM1 (IPR034217) - T[703-776] 9.84995E-29 |
| Pfam |
RRM_dom (IPR000504) - T[704-773] 2.2E-11 - T[801-869] 1.4E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SART3_HUMAN | 37.34 % | 617 | 0 |