- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S146.g06861.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S146 [59,556 / 70,415]
Amino acid sequence
Length: 898
>Harore.CG.MTP2014.S146.g06861.01.p
MSPSRTRTPTEYNIFKENIRFAGQNKMANSLDLLTKINDEFLTCQICFETYTCPKSLNCQ
HTFCKKCLQAYLTPNASALLCPTCRCAQPLTNDGIDGLKDNFFISSMADMLKTVKEISSD
DKQGTSLLCDTCDDDNRKTATARCLDCTDFLCNECSTWHRRTKLTRGHKIVSLSEFESGI
HNKELKSRAKIYCMMCYGCLNTIGTERAVPRKPLPVLWRDYRWPAVQIHEGEAAKIYCES
CQCPICHECVESSHSCHKRRSLKEEIVSQSITIEKFLSSAKNKTEVLRTMQHSMQELKRL
KKQVKDQAELEINKTCERFISAVERRKQEMIDELHNLHMNEIKQINADDDSVEMQLSSLM
SCAEFSRKVLEYGTPKEVLGLNNQMTQILQQLLETHPAIKYNKEDHTDQIQFSFNSEDLM
GIPPLFGRLETVKTPFPNSINTVLRDLDAFCIGDPSLTIVKNGINFQRLDSIETRLIKQI
GKQGTGDGDFESTPNLVVNSVGEIITSDSDACKIQIFDPHGHFKDSFKTEVNGKSLRPAG
IAVLHNDDIVVCCEDQVYIWTHEGKKVLGFGKGMFSNCNSIAVDKHNRLVITDIGKHCIT
IYKDDGTFIDQFGMAGTNSEGKLIEPRYVACDSQNNIIVSDSGDCNVKKFNSQGELLYTF
GGEGPERGQFQGPRGISIDNENNIIVADCWNHRVDMFTTEGTFIRHVATGVDGLHFPWSV
ALTKTGKLILSEDYSWSVKLFALPDYRKGSMSSADDVTSPTTILMPDLEQFAGQFDMSNI
LNSKLSWWLNSPGANDISKTLNVTSTHSSMASRKERTTRSKSLTSKISSSSDSDLTSPTM
LSITSPAPPPPTPMTTEMPNGNILAGNHNGIGKVGRGSFKGKNFYQYDNMNAPVVNGL
Nucleotide sequence
Length: 4,134
>Harore.CG.MTP2014.S146.g06861.01.t
GCAAATAAATGTTTGTACCTTTTTAGTACTTTACAATTCAGTTAGCTGCTAACAGATTAC
AGACAAAGAAAAAAAATAGCAAAATATATTTTTTATGAAATTCTACGAATTTTGAGTAAT
TCGATGTCACTCAAATCGTTATTCTAAACCATTTGCAAATACCGATGAGTCCCTCAAGAA
CAAGAACGCCGACTGAATATAACATATTCAAGGAGAACATCAGGTTTGCGGGGCAAAACA
AGATGGCCAATTCTCTTGACTTGTTGACGAAAATTAATGATGAATTCCTAACATGTCAGA
TATGTTTCGAAACATACACTTGTCCGAAAAGTCTGAACTGTCAGCACACCTTCTGCAAGA
AATGTCTGCAAGCGTACCTAACCCCGAACGCGTCTGCCTTGCTCTGTCCAACTTGTCGAT
GCGCGCAACCACTGACAAACGACGGCATCGACGGACTGAAAGACAATTTTTTCATATCCA
GCATGGCAGACATGCTGAAAACGGTAAAGGAAATAAGCAGTGACGACAAACAAGGCACGT
CACTGTTGTGCGACACGTGTGATGACGACAATAGAAAAACTGCGACCGCGAGATGCCTGG
ACTGCACCGACTTCCTTTGCAACGAGTGTTCGACCTGGCATAGACGTACCAAATTGACCA
GGGGGCATAAAATCGTTTCGCTGTCGGAATTCGAGTCCGGGATCCACAACAAGGAATTGA
AGAGCCGGGCAAAGATCTATTGCATGATGTGCTATGGTTGTCTCAACACAATAGGTACCG
AACGTGCCGTTCCAAGGAAACCGCTACCGGTTCTATGGCGTGATTACCGGTGGCCGGCAG
TTCAGATTCATGAAGGCGAAGCGGCCAAAATCTACTGCGAGTCATGTCAGTGTCCCATAT
GCCACGAATGCGTGGAATCAAGTCATTCATGCCACAAAAGACGATCACTCAAAGAAGAAA
TTGTCAGCCAGAGCATAACGATCGAAAAGTTCCTTTCCTCTGCAAAAAACAAAACCGAGG
TATTGCGCACTATGCAACACAGCATGCAAGAACTAAAGAGACTGAAAAAGCAAGTCAAAG
ATCAAGCTGAACTCGAGATAAACAAAACTTGCGAAAGGTTCATTTCGGCAGTAGAACGAA
GAAAGCAAGAAATGATAGACGAGCTGCACAACCTTCACATGAACGAGATCAAGCAGATAA
ATGCAGATGACGACTCTGTAGAAATGCAACTGAGTTCTCTCATGTCTTGTGCAGAATTTT
CAAGAAAGGTGCTTGAATATGGAACACCGAAAGAAGTGCTGGGACTGAATAATCAAATGA
CACAAATTCTACAACAACTCCTTGAAACTCATCCAGCTATCAAGTATAACAAGGAAGATC
ACACAGATCAGATTCAATTCTCTTTCAACTCGGAAGATTTGATGGGAATACCACCGCTTT
TCGGAAGGTTGGAAACTGTCAAAACGCCTTTCCCGAATTCTATCAATACGGTACTAAGAG
ACCTAGATGCCTTCTGCATCGGAGATCCAAGTCTAACTATTGTCAAAAATGGAATCAACT
TTCAACGACTTGACTCGATCGAAACCCGGTTGATCAAGCAAATCGGAAAACAGGGAACCG
GCGACGGTGATTTTGAGTCTACTCCGAACTTAGTTGTAAATTCCGTTGGAGAAATCATAA
CTTCAGACAGTGATGCATGCAAAATACAGATTTTTGATCCGCACGGACATTTCAAGGATT
CTTTCAAAACTGAGGTGAACGGGAAAAGCCTCAGACCGGCAGGGATAGCTGTTTTACACA
ACGATGATATTGTGGTTTGTTGCGAGGATCAGGTGTACATTTGGACGCACGAGGGGAAGA
AAGTGCTTGGATTCGGAAAAGGAATGTTTTCCAATTGCAACAGCATAGCGGTAGACAAAC
ACAACAGACTTGTGATCACAGATATTGGGAAGCATTGCATCACTATCTACAAGGATGATG
GCACTTTCATTGACCAATTTGGTATGGCTGGCACCAACAGTGAAGGAAAGCTGATTGAAC
CCAGATATGTTGCATGCGATTCACAAAACAATATCATTGTTTCGGACAGTGGAGACTGCA
ATGTGAAGAAATTCAATTCTCAGGGCGAGCTACTTTATACATTCGGAGGAGAGGGTCCAG
AACGAGGTCAGTTCCAGGGACCGAGAGGCATCAGCATTGACAATGAGAATAATATCATTG
TGGCAGACTGCTGGAATCACCGAGTGGACATGTTTACGACTGAGGGAACGTTTATTCGGC
ATGTAGCGACAGGAGTTGACGGTCTTCATTTCCCATGGTCGGTAGCACTGACAAAAACTG
GAAAACTAATCCTTTCTGAAGATTACAGTTGGTCAGTAAAACTGTTTGCGCTGCCTGACT
ACCGTAAAGGATCAATGAGCTCCGCAGACGACGTAACCTCTCCAACAACCATCCTCATGC
CAGATCTGGAACAATTCGCAGGGCAGTTTGACATGTCGAATATACTCAACAGCAAGTTGT
CATGGTGGCTTAATTCTCCAGGAGCAAATGACATTTCTAAAACCTTGAATGTAACAAGCA
CACACAGTTCAATGGCTTCAAGAAAAGAACGAACGACCAGAAGCAAATCGTTAACCAGCA
AGATATCATCATCAAGCGACAGCGACTTAACATCACCGACCATGTTATCTATCACATCGC
CAGCTCCTCCCCCCCCTACACCAATGACCACTGAAATGCCGAACGGAAACATCTTGGCGG
GGAATCACAACGGCATAGGAAAAGTTGGGAGAGGGTCATTCAAAGGAAAAAATTTCTATC
AATACGACAATATGAATGCTCCGGTGGTAAATGGTTTATAATCTAAGATGTGAAGAAGTA
CAATACCTATGCCTTGGTTCAGAATGCCAATTGCCAAAAAAAAAAGTTGGTTAGTGTACC
AATGGTTGTTACACAGCTATATTGAAATGGTAAAAATAAACTACTATGACAAAGACTTGG
AAATTACTATCATTATATTTGGAGTTCTACCTCTGAAAATAACTTTTGACTAGTGTTGGT
TTAATACATTAAAATCATGGGAAAGTTACCTTGCTCTTAATATTAGTTGAATAGAGCTAT
CACATACCAATACAACTAACAATAAAGTTACCACATAAAGGATACAAAATCAAGTTCCAA
CTATTTGCCAAATATTTTTTCTGTGTCTACTTTTACTAACTCTTTCTATTAAAACTGCAG
TACTGACTAAGTGACGCCGCTATTAGATTCAATAAAGGTGTCGTGTACTTTACAGCTACT
ACAAGTTTTACACAGTCAAGAGCCAATTAATTCCCTGATGGCAAAAATCACAACTAAAAT
AAACTGAAATGTAGAAAATAATCTTTCAAAAAAAGAACTGTTTCTATATCTTAGTTTTGG
TATTTGTTCTACTATAATCATGAAAATGCTTGTTGCTATGTTTTACTATACCTCCCATTT
TTTTTCACAGGGAGGAGATTACTGTCGGACTGGATAAAATAGTCTTCCCTAATTTTTTCT
TTCAGAAAATCAGTTTTTGTGAATACATTGTTTTGTACAAAGATTTTGTGTCAATAAAAG
ACTTGAATTAGAGATCAGATAATCGATCAGCAAATAACTGACTAGTGCAATTACAAATTA
CTACTTATATATACTATGATTGTATAAACGCAAGTCACATGCTGTGTTGCTTTGTTTCAT
TGGGCTTAGAGGCCATGATTTAATACTAGAAATTAACAAACATGCAATTTATCTCACTCT
CAGTATAACTCCCAACGACAATTTAACGGAACTAGGTAAATAGTGAAATTCTCAACTTGA
TACAAATACCTTTTGACAGAAAGTTCCTAGTTCCAAAAATAGCTCAGAAGTAAGTTTACT
AGTATGATCAGTATGCACTAAGAATAAAACTCACTGAGAACTAATTTCAACTGCCAGATG
ACTTTGTTGGCGAAAATCATACACTATTCCTAGTATTAAGCCTAGTGTAAATATAAATTT
GAGATAAATACTATACTAATATACTGAAATGTAAAACCTGAAGGTACTGTATCAATTAAA
AATGTAATAATAATAAAATCAAGTACTCACTCAGTTAGGTTTTCAAACTGGTCA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[25-106] 1.3E-13 |
| Pfam |
Znf_RING (IPR001841) - T[43-85] 8.3E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[44-85] 12.696 |
| SMART |
Znf_RING (IPR001841) - T[44-84] 2.0E-6 - T[129-196] 10.0 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[59-68] . |
| SMART |
Znf_B-box (IPR000315) - T[124-173] 1.0E-5 - T[221-262] 0.036 |
| Pfam |
Znf_B-box (IPR000315) - T[130-173] 1.7E-5 - T[228-261] 9.9E-6 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[132-173] 9.143 - T[229-262] 9.3 |
| CDD |
Znf_B-box (IPR000315) - T[228-262] 1.15344E-6 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[467-661] 4.3E-43 - T[662-749] 3.0E-20 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[477-520] 8.244 - T[567-605] 9.334 - T[626-653] 10.054 - T[657-700] 14.515 - T[710-744] 5.757 |
| Pfam |
NHL_repeat (IPR001258) - T[670-694] 2.3E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 22.749 % | 156 | 4.13E-39 |
| TRIM2_HUMAN | 30.824 % | 162 | 2.54E-41 |
| TRIM3_HUMAN | 31.655 % | 162 | 2.81E-41 |