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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S146.g06861.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Location

S146 [59,556 / 70,415]

Sequences

Amino acid sequence

Length: 898

>Harore.CG.MTP2014.S146.g06861.01.p
MSPSRTRTPTEYNIFKENIRFAGQNKMANSLDLLTKINDEFLTCQICFETYTCPKSLNCQ
HTFCKKCLQAYLTPNASALLCPTCRCAQPLTNDGIDGLKDNFFISSMADMLKTVKEISSD
DKQGTSLLCDTCDDDNRKTATARCLDCTDFLCNECSTWHRRTKLTRGHKIVSLSEFESGI
HNKELKSRAKIYCMMCYGCLNTIGTERAVPRKPLPVLWRDYRWPAVQIHEGEAAKIYCES
CQCPICHECVESSHSCHKRRSLKEEIVSQSITIEKFLSSAKNKTEVLRTMQHSMQELKRL
KKQVKDQAELEINKTCERFISAVERRKQEMIDELHNLHMNEIKQINADDDSVEMQLSSLM
SCAEFSRKVLEYGTPKEVLGLNNQMTQILQQLLETHPAIKYNKEDHTDQIQFSFNSEDLM
GIPPLFGRLETVKTPFPNSINTVLRDLDAFCIGDPSLTIVKNGINFQRLDSIETRLIKQI
GKQGTGDGDFESTPNLVVNSVGEIITSDSDACKIQIFDPHGHFKDSFKTEVNGKSLRPAG
IAVLHNDDIVVCCEDQVYIWTHEGKKVLGFGKGMFSNCNSIAVDKHNRLVITDIGKHCIT
IYKDDGTFIDQFGMAGTNSEGKLIEPRYVACDSQNNIIVSDSGDCNVKKFNSQGELLYTF
GGEGPERGQFQGPRGISIDNENNIIVADCWNHRVDMFTTEGTFIRHVATGVDGLHFPWSV
ALTKTGKLILSEDYSWSVKLFALPDYRKGSMSSADDVTSPTTILMPDLEQFAGQFDMSNI
LNSKLSWWLNSPGANDISKTLNVTSTHSSMASRKERTTRSKSLTSKISSSSDSDLTSPTM
LSITSPAPPPPTPMTTEMPNGNILAGNHNGIGKVGRGSFKGKNFYQYDNMNAPVVNGL

Nucleotide sequence

Length: 4,134

>Harore.CG.MTP2014.S146.g06861.01.t
GCAAATAAATGTTTGTACCTTTTTAGTACTTTACAATTCAGTTAGCTGCTAACAGATTAC
AGACAAAGAAAAAAAATAGCAAAATATATTTTTTATGAAATTCTACGAATTTTGAGTAAT
TCGATGTCACTCAAATCGTTATTCTAAACCATTTGCAAATACCGATGAGTCCCTCAAGAA
CAAGAACGCCGACTGAATATAACATATTCAAGGAGAACATCAGGTTTGCGGGGCAAAACA
AGATGGCCAATTCTCTTGACTTGTTGACGAAAATTAATGATGAATTCCTAACATGTCAGA
TATGTTTCGAAACATACACTTGTCCGAAAAGTCTGAACTGTCAGCACACCTTCTGCAAGA
AATGTCTGCAAGCGTACCTAACCCCGAACGCGTCTGCCTTGCTCTGTCCAACTTGTCGAT
GCGCGCAACCACTGACAAACGACGGCATCGACGGACTGAAAGACAATTTTTTCATATCCA
GCATGGCAGACATGCTGAAAACGGTAAAGGAAATAAGCAGTGACGACAAACAAGGCACGT
CACTGTTGTGCGACACGTGTGATGACGACAATAGAAAAACTGCGACCGCGAGATGCCTGG
ACTGCACCGACTTCCTTTGCAACGAGTGTTCGACCTGGCATAGACGTACCAAATTGACCA
GGGGGCATAAAATCGTTTCGCTGTCGGAATTCGAGTCCGGGATCCACAACAAGGAATTGA
AGAGCCGGGCAAAGATCTATTGCATGATGTGCTATGGTTGTCTCAACACAATAGGTACCG
AACGTGCCGTTCCAAGGAAACCGCTACCGGTTCTATGGCGTGATTACCGGTGGCCGGCAG
TTCAGATTCATGAAGGCGAAGCGGCCAAAATCTACTGCGAGTCATGTCAGTGTCCCATAT
GCCACGAATGCGTGGAATCAAGTCATTCATGCCACAAAAGACGATCACTCAAAGAAGAAA
TTGTCAGCCAGAGCATAACGATCGAAAAGTTCCTTTCCTCTGCAAAAAACAAAACCGAGG
TATTGCGCACTATGCAACACAGCATGCAAGAACTAAAGAGACTGAAAAAGCAAGTCAAAG
ATCAAGCTGAACTCGAGATAAACAAAACTTGCGAAAGGTTCATTTCGGCAGTAGAACGAA
GAAAGCAAGAAATGATAGACGAGCTGCACAACCTTCACATGAACGAGATCAAGCAGATAA
ATGCAGATGACGACTCTGTAGAAATGCAACTGAGTTCTCTCATGTCTTGTGCAGAATTTT
CAAGAAAGGTGCTTGAATATGGAACACCGAAAGAAGTGCTGGGACTGAATAATCAAATGA
CACAAATTCTACAACAACTCCTTGAAACTCATCCAGCTATCAAGTATAACAAGGAAGATC
ACACAGATCAGATTCAATTCTCTTTCAACTCGGAAGATTTGATGGGAATACCACCGCTTT
TCGGAAGGTTGGAAACTGTCAAAACGCCTTTCCCGAATTCTATCAATACGGTACTAAGAG
ACCTAGATGCCTTCTGCATCGGAGATCCAAGTCTAACTATTGTCAAAAATGGAATCAACT
TTCAACGACTTGACTCGATCGAAACCCGGTTGATCAAGCAAATCGGAAAACAGGGAACCG
GCGACGGTGATTTTGAGTCTACTCCGAACTTAGTTGTAAATTCCGTTGGAGAAATCATAA
CTTCAGACAGTGATGCATGCAAAATACAGATTTTTGATCCGCACGGACATTTCAAGGATT
CTTTCAAAACTGAGGTGAACGGGAAAAGCCTCAGACCGGCAGGGATAGCTGTTTTACACA
ACGATGATATTGTGGTTTGTTGCGAGGATCAGGTGTACATTTGGACGCACGAGGGGAAGA
AAGTGCTTGGATTCGGAAAAGGAATGTTTTCCAATTGCAACAGCATAGCGGTAGACAAAC
ACAACAGACTTGTGATCACAGATATTGGGAAGCATTGCATCACTATCTACAAGGATGATG
GCACTTTCATTGACCAATTTGGTATGGCTGGCACCAACAGTGAAGGAAAGCTGATTGAAC
CCAGATATGTTGCATGCGATTCACAAAACAATATCATTGTTTCGGACAGTGGAGACTGCA
ATGTGAAGAAATTCAATTCTCAGGGCGAGCTACTTTATACATTCGGAGGAGAGGGTCCAG
AACGAGGTCAGTTCCAGGGACCGAGAGGCATCAGCATTGACAATGAGAATAATATCATTG
TGGCAGACTGCTGGAATCACCGAGTGGACATGTTTACGACTGAGGGAACGTTTATTCGGC
ATGTAGCGACAGGAGTTGACGGTCTTCATTTCCCATGGTCGGTAGCACTGACAAAAACTG
GAAAACTAATCCTTTCTGAAGATTACAGTTGGTCAGTAAAACTGTTTGCGCTGCCTGACT
ACCGTAAAGGATCAATGAGCTCCGCAGACGACGTAACCTCTCCAACAACCATCCTCATGC
CAGATCTGGAACAATTCGCAGGGCAGTTTGACATGTCGAATATACTCAACAGCAAGTTGT
CATGGTGGCTTAATTCTCCAGGAGCAAATGACATTTCTAAAACCTTGAATGTAACAAGCA
CACACAGTTCAATGGCTTCAAGAAAAGAACGAACGACCAGAAGCAAATCGTTAACCAGCA
AGATATCATCATCAAGCGACAGCGACTTAACATCACCGACCATGTTATCTATCACATCGC
CAGCTCCTCCCCCCCCTACACCAATGACCACTGAAATGCCGAACGGAAACATCTTGGCGG
GGAATCACAACGGCATAGGAAAAGTTGGGAGAGGGTCATTCAAAGGAAAAAATTTCTATC
AATACGACAATATGAATGCTCCGGTGGTAAATGGTTTATAATCTAAGATGTGAAGAAGTA
CAATACCTATGCCTTGGTTCAGAATGCCAATTGCCAAAAAAAAAAGTTGGTTAGTGTACC
AATGGTTGTTACACAGCTATATTGAAATGGTAAAAATAAACTACTATGACAAAGACTTGG
AAATTACTATCATTATATTTGGAGTTCTACCTCTGAAAATAACTTTTGACTAGTGTTGGT
TTAATACATTAAAATCATGGGAAAGTTACCTTGCTCTTAATATTAGTTGAATAGAGCTAT
CACATACCAATACAACTAACAATAAAGTTACCACATAAAGGATACAAAATCAAGTTCCAA
CTATTTGCCAAATATTTTTTCTGTGTCTACTTTTACTAACTCTTTCTATTAAAACTGCAG
TACTGACTAAGTGACGCCGCTATTAGATTCAATAAAGGTGTCGTGTACTTTACAGCTACT
ACAAGTTTTACACAGTCAAGAGCCAATTAATTCCCTGATGGCAAAAATCACAACTAAAAT
AAACTGAAATGTAGAAAATAATCTTTCAAAAAAAGAACTGTTTCTATATCTTAGTTTTGG
TATTTGTTCTACTATAATCATGAAAATGCTTGTTGCTATGTTTTACTATACCTCCCATTT
TTTTTCACAGGGAGGAGATTACTGTCGGACTGGATAAAATAGTCTTCCCTAATTTTTTCT
TTCAGAAAATCAGTTTTTGTGAATACATTGTTTTGTACAAAGATTTTGTGTCAATAAAAG
ACTTGAATTAGAGATCAGATAATCGATCAGCAAATAACTGACTAGTGCAATTACAAATTA
CTACTTATATATACTATGATTGTATAAACGCAAGTCACATGCTGTGTTGCTTTGTTTCAT
TGGGCTTAGAGGCCATGATTTAATACTAGAAATTAACAAACATGCAATTTATCTCACTCT
CAGTATAACTCCCAACGACAATTTAACGGAACTAGGTAAATAGTGAAATTCTCAACTTGA
TACAAATACCTTTTGACAGAAAGTTCCTAGTTCCAAAAATAGCTCAGAAGTAAGTTTACT
AGTATGATCAGTATGCACTAAGAATAAAACTCACTGAGAACTAATTTCAACTGCCAGATG
ACTTTGTTGGCGAAAATCATACACTATTCCTAGTATTAAGCCTAGTGTAAATATAAATTT
GAGATAAATACTATACTAATATACTGAAATGTAAAACCTGAAGGTACTGTATCAATTAAA
AATGTAATAATAATAAAATCAAGTACTCACTCAGTTAGGTTTTCAAACTGGTCA

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[25-106] 1.3E-13
Pfam
Znf_RING (IPR001841) - T[43-85] 8.3E-7
ProSiteProfiles
Znf_RING (IPR001841) - T[44-85] 12.696
SMART
Znf_RING (IPR001841) - T[44-84] 2.0E-6 - T[129-196] 10.0
ProSitePatterns
Znf_RING_CS (IPR017907) - T[59-68] .
SMART
Znf_B-box (IPR000315) - T[124-173] 1.0E-5 - T[221-262] 0.036
Pfam
Znf_B-box (IPR000315) - T[130-173] 1.7E-5 - T[228-261] 9.9E-6
ProSiteProfiles
Znf_B-box (IPR000315) - T[132-173] 9.143 - T[229-262] 9.3
CDD
Znf_B-box (IPR000315) - T[228-262] 1.15344E-6
Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[467-661] 4.3E-43 - T[662-749] 3.0E-20
ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[477-520] 8.244 - T[567-605] 9.334 - T[626-653] 10.054 - T[657-700] 14.515 - T[710-744] 5.757
Pfam
NHL_repeat (IPR001258) - T[670-694] 2.3E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN41_HUMAN 22.749 % 156 4.13E-39
TRIM2_HUMAN 30.824 % 162 2.54E-41
TRIM3_HUMAN 31.655 % 162 2.81E-41