- Transcript 'KH2012:KH.C9.3.v1.A....' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S1463.g12889.01.t
Possible name(s)
PHF1; PHF2; PHF8
Gene model
Location
S1463 [666 / 4,158]
Amino acid sequence
Length: 1,134
>Harore.CG.MTP2014.S1463.g12889.01.p
MENVSPTITRSGESDSEASGNNAMIPKCSGGARRKYNTFSLAEFCRSLRTLREFDPSKAH
CWEELHHAIFLGKRNPTRILAQKRSLKKFWEKHEHAIAEECGAAMTKSTPNSDSASVSVS
VSDFVSDSSTESDKSSSSTSSAGGFRILQVVADVERIPENAAINTNLFNFGAEEDAASFT
GTNSSTNFHRNEQSEKISQVPDTDMFDAISNDSDESYPEQAASEWTPVESLSEEAIFVFS
QMEWRGIKGSVINHSIADKNWSDKVRAKLKDSNPYCSFAFKRHRINAKSLRTNRIFHCTG
WCRNYPCQRTFTINMSNERELEFHVKYVGRVIHKKRIGQHLKGDRRIEARKGMKNVLPRA
KYLENIGEIPEDVFRSGNRDSVPSTSVLKRVRHEGNKISVPSKCVWESLISIQKKQREKS
KTKHILGTLQTIAVEPPHIMVWAEEGVRRFHERTKIDIAYIDATGSILTPIDKRPFYIYE
ITTRSAKKGKSPVAVASYITNRHNITSISNFLRSFLSDEVKLYGKPSVRLFICDGSMALM
RSVIHVYMNEDLEAYFCRCFNVVTGNGNQHMLTKPFLRSCVSHLMKNAKEVANKHPKMSR
QIKFIFGLLMKTGDLEKLKMIIYHLVILLLGENFELARDSWNWLKAKIEEVDADDIEFYN
RTRLQEQSPHMLISSNQSNPFMTIINEVVESAKKAMEQSTAMKDSNVFYCPVVLTDFLKF
WAPKICFWSNLMTGDLGRHGTGNAYTKYSKFFAGLERKPLQNLSRDNRTQGIMEKSQQEL
KRTRLHGKRCNRLDQLAIVLDQMHTPLLRECSDNEYAGIACSTPEETETWRKRRRVTSSN
SKGVYLQPPRTKFNEIEQKRNKSEIIKSTQTNVTQISYKDRFIHTKKFSQLSSLQDIFLR
KILDPNYELESDPIDYSMALLARQFPGLDGLQPCGVYHRDFKRSPYTPSKTFVQIINVHG
NHWVTVSNHFSDNPNSLCVYDSAYKRYTETDFFELSKLIRPTCKKVMLSFPGVQQQTHNY
CGMFAIMFAYAICLKIEPELIAVKESTLREEIMLILQNGSFETNLRRRTKPWRYHKQTTV
NIYCNCKLADHGGFMISCTQCRVWYHEECITTRIPTPAKTGKKVPWLCASCEKN
Nucleotide sequence
Length: 3,405
>Harore.CG.MTP2014.S1463.g12889.01.t
ATGGAAAACGTCTCGCCAACCATAACTCGTTCCGGAGAATCAGACTCTGAGGCATCTGGA
AACAATGCTATGATTCCGAAATGTTCTGGCGGTGCTAGACGGAAATATAATACTTTTAGC
TTAGCGGAATTCTGTCGTTCCCTACGGACACTTCGAGAATTTGATCCAAGTAAAGCTCAT
TGCTGGGAAGAATTGCACCACGCAATCTTCCTGGGAAAACGTAACCCTACAAGAATACTT
GCTCAAAAAAGATCTCTGAAAAAATTTTGGGAAAAACACGAGCATGCTATTGCTGAAGAA
TGTGGAGCAGCGATGACAAAATCTACACCTAATTCTGATTCTGCTTCAGTTTCTGTTTCT
GTTTCTGATTTTGTTTCTGATTCTTCTACCGAAAGCGATAAGAGTTCTTCCAGTACCTCC
AGTGCTGGGGGTTTTAGAATTCTGCAAGTTGTTGCAGATGTTGAAAGAATTCCAGAAAAC
GCTGCAATAAATACTAATTTATTTAACTTTGGTGCAGAAGAGGATGCAGCTTCTTTTACT
GGAACGAATTCGTCAACTAATTTCCATCGGAACGAACAATCGGAGAAAATCTCTCAAGTG
CCTGACACTGACATGTTTGATGCAATTTCAAATGATTCCGACGAATCGTATCCAGAACAA
GCCGCAAGTGAGTGGACGCCAGTGGAATCACTATCCGAAGAGGCCATATTTGTGTTTTCA
CAAATGGAGTGGAGAGGTATCAAAGGTTCCGTGATAAATCATTCCATTGCAGACAAAAAT
TGGAGCGACAAAGTTCGCGCGAAATTGAAAGATTCAAATCCATATTGTTCATTTGCCTTC
AAAAGACACAGGATAAATGCAAAAAGCCTCCGTACCAACAGGATATTTCATTGTACCGGT
TGGTGCCGCAATTATCCTTGTCAAAGAACATTTACTATTAATATGTCCAACGAAAGGGAA
CTTGAATTTCATGTTAAATATGTAGGTCGGGTCATTCACAAAAAAAGGATAGGACAACAC
CTTAAAGGAGACAGGAGAATTGAGGCACGTAAAGGCATGAAGAATGTTCTACCACGAGCA
AAATATTTAGAGAACATTGGAGAAATCCCAGAAGACGTCTTTCGGTCTGGTAACAGAGAC
AGCGTCCCATCGACCAGTGTTCTGAAGCGTGTTCGCCATGAAGGTAACAAAATATCAGTA
CCAAGTAAATGTGTATGGGAATCTCTCATATCGATCCAAAAGAAGCAGAGAGAAAAATCA
AAGACCAAACATATTCTTGGTACATTACAAACCATCGCTGTAGAACCACCACACATCATG
GTATGGGCTGAGGAAGGCGTTCGTCGATTTCATGAACGCACAAAAATCGACATTGCCTAC
ATCGATGCAACTGGGAGCATTTTAACTCCGATAGACAAAAGACCATTTTATATATATGAA
ATTACAACGCGAAGTGCAAAGAAGGGAAAATCTCCCGTAGCAGTTGCATCATACATCACG
AATAGGCACAATATAACATCAATAAGTAATTTCCTGAGGTCCTTCCTATCAGATGAAGTA
AAACTGTATGGAAAACCATCGGTCCGTTTATTCATTTGTGATGGAAGTATGGCGTTGATG
CGTTCAGTAATCCATGTATACATGAATGAAGATCTGGAGGCGTACTTTTGTCGATGTTTT
AATGTGGTGACTGGGAATGGAAATCAACATATGCTCACAAAACCCTTTCTGCGATCGTGT
GTCAGCCACCTGATGAAAAATGCTAAAGAGGTGGCTAACAAACACCCAAAGATGTCGCGG
CAAATTAAATTCATATTTGGACTCCTCATGAAAACTGGGGATCTTGAAAAACTAAAGATG
ATCATCTATCACTTGGTCATTCTCTTGCTAGGCGAAAACTTCGAGTTGGCTCGTGATAGC
TGGAATTGGCTCAAAGCTAAAATTGAGGAGGTTGATGCAGATGATATTGAATTCTACAAT
CGGACTCGGTTACAAGAACAATCTCCACATATGTTAATTTCATCAAATCAATCCAATCCA
TTCATGACCATTATAAATGAAGTTGTTGAAAGTGCAAAAAAAGCAATGGAACAATCCACT
GCTATGAAAGACTCCAATGTATTCTACTGTCCTGTGGTACTGACAGATTTCCTGAAATTC
TGGGCTCCAAAAATCTGTTTTTGGAGTAATCTAATGACTGGGGATTTGGGTCGACATGGG
ACAGGTAACGCGTACACAAAATACTCGAAATTTTTCGCTGGACTGGAAAGGAAGCCACTG
CAGAACCTTAGTCGTGATAATCGAACGCAAGGAATTATGGAGAAGAGTCAGCAGGAGTTG
AAGCGGACAAGGTTGCATGGAAAACGATGTAACCGATTGGATCAATTGGCAATAGTTTTA
GATCAAATGCACACTCCACTGCTACGCGAATGTAGTGATAATGAGTATGCTGGTATAGCA
TGCTCCACACCGGAGGAAACTGAAACCTGGCGAAAGAGGCGTCGAGTTACCAGCTCAAAT
TCGAAGGGAGTATATTTGCAGCCTCCAAGAACGAAATTTAATGAAATTGAACAAAAACGT
AACAAATCTGAGATCATCAAATCAACGCAAACCAACGTTACGCAGATTTCATACAAAGAC
CGCTTCATCCACACCAAGAAGTTCAGCCAACTTTCTTCATTGCAGGACATCTTTTTACGC
AAAATACTCGATCCGAATTATGAACTGGAAAGTGATCCAATCGATTACAGCATGGCTCTT
CTTGCACGCCAATTCCCCGGATTAGATGGTCTTCAACCATGTGGTGTCTACCACCGGGAT
TTCAAACGTTCACCGTACACCCCTTCAAAAACATTTGTCCAAATTATTAATGTACACGGA
AACCACTGGGTGACCGTTTCAAATCATTTTTCAGACAATCCAAACTCTCTATGTGTATAT
GACAGTGCATATAAGCGGTACACCGAAACCGACTTCTTCGAGCTCTCCAAACTAATAAGG
CCTACATGTAAAAAAGTCATGTTATCATTTCCTGGGGTGCAACAGCAAACACATAATTAC
TGTGGAATGTTTGCTATCATGTTTGCATATGCAATATGCCTGAAGATAGAGCCTGAACTG
ATAGCAGTAAAGGAATCGACTCTAAGAGAGGAAATCATGCTTATATTGCAAAATGGATCA
TTTGAAACTAATTTACGCCGACGGACAAAGCCATGGAGGTACCATAAACAAACTACTGTG
AACATTTATTGCAACTGCAAGCTGGCTGATCACGGTGGCTTCATGATCAGCTGTACACAA
TGTCGTGTATGGTATCATGAGGAATGTATTACTACAAGAATTCCCACCCCAGCAAAAACC
GGCAAAAAAGTACCATGGTTATGTGCATCTTGCGAAAAAAATTGA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[1066-1134] 3.4E-10 |
| SUPERFAMILY |
Znf_FYVE_PHD (IPR011011) - T[1075-1132] 8.42E-10 |
| ProSiteProfiles |
Znf_PHD-finger (IPR019787) - T[1081-1134] 8.84 |
| Pfam |
Znf_PHD-finger (IPR019787) - T[1083-1133] 3.2E-8 |
| SMART |
Znf_PHD (IPR001965) - T[1083-1132] 2.1E-7 |
| ProSitePatterns |
Zinc_finger_PHD-type_CS (IPR019786) - T[1084-1131] . |
| Protein Name | Identity | Bit Score | e-value |
|---|