- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S142.g16016.01.t
Possible name(s)
CDC23; CDC27; TTC6
Gene model
Location
S142 [36,735 / 43,799]
Amino acid sequence
Length: 1,022
>Harore.CG.MTP2014.S142.g16016.01.p
MTILQEPIKMYISNIQAAIWHAVNHYAYNDAIFLAERLFAEVGSNEALFLLATAYYRLGK
PKVAQLLLDKHGVTSPECKLLYAQTAWDLEEYAKIERILSSDLGLPGSNAKGVNQTKGQS
YMSTISEIQSEFGESACFALGLLGRVYLRTERHDRAELCLMASLKLNPFLWMSFELLCQA
GKKPDPDEVFNVNNLHSFSGCRSHIPSVSPINGSNHQHLQQPHTILRRKSISKDLELENS
APDAAMMLRLTRHTQNRSYLTETTQQHSAPVPMSVTPSSAFSMKSGFPTPMGQKSQTPVT
SAKSVLLNVNSEHLVTPPPSRVDFAGIISTSGSLKPLPSSAASQRDTTIGSPGSEFLRST
PAGDHRSDWDSSIDSFSCIASSAMRRSTRTQQLIGRSLIGGPTSMSPLTPSFGVLPLAET
PSPATERALSMVTPADTALQGDIMAPTKKMMTRQSRKPHSADLGLNQGPGKLNFSSENSH
RLTQSNANTTNMSQLSTPSNQQMAPVRRSTRIFANAANTIKENTKTGRSKFHQPKSALKR
NARSRQANTKSVRDLSEEISKADAQSCEKQLHSNAVANSQSHALMLATQKSAVEGLMSLL
RDMAYAFSALCQYDCREAICSFNNLPHHHRNTGWVLSSLGRAHFELTEYNEAANIFKELH
LLAPHYFRGLEIYSTTLWHLKREVELSALAHDMKNLDQLCPETWCAVGNCFSLQRDHTSA
ASFFHRAVQLDSNCSYAYTLLGHELGLTDDLDGALTCYRNAVRCNPRHYNAWYGIGTIYY
KQEKFKIAELHFRKALAIHPHSSVLLCHIGIAQHALKQTTLALRTLNAAVEMEPRNPLCK
FHRATVLFAAERYQDALEELLELMQIVPKESLVYFLLGKVYKKLRKNHLAVISFSWAMEL
DPKGANNQIKEAIDKQNLPDDDEQSEEETGEGSILDSSLLDTDNNTVERQDGGLFQESDI
QQDFQDRRRQHDSSGDLLHHDSDERDLRGISCKAVIWSKETQHTRLYGNGCNLGLGIFFV
AI
Nucleotide sequence
Length: 3,569
>Harore.CG.MTP2014.S142.g16016.01.t
TATTCAGGGTTCCCATTCACAAATGAAATTCGTTCGATTTGCTGCATGAAATAGATATAA
AATCTATAGGTTAAATAGAAAAAGAAATATATTTTAGTGAATAGTAACCTTGTTGGCAAA
TCTCACTTGAAGTGCGAAGACGCCGCTCACTCCTATGAATTAAACTCCTTGTTGCCAAAC
AGCTGCAGATGACTATACTGCAAGAGCCAATAAAGATGTATATTTCCAACATTCAGGCAG
CAATATGGCATGCTGTCAATCATTATGCTTACAATGATGCGATATTCTTAGCAGAGAGAC
TTTTTGCTGAAGTGGGTTCGAACGAAGCACTGTTCCTTCTGGCAACTGCCTATTACCGCC
TAGGTAAACCGAAAGTGGCCCAGTTGCTATTGGACAAGCATGGCGTGACGTCTCCAGAAT
GTAAATTACTGTATGCTCAAACAGCTTGGGATTTAGAAGAATATGCTAAAATAGAGCGGA
TTTTGTCAAGTGATTTGGGACTGCCAGGTTCCAATGCTAAAGGAGTAAATCAGACGAAGG
GACAATCCTACATGTCAACGATTTCAGAAATCCAGTCAGAATTCGGAGAATCTGCATGCT
TTGCATTAGGACTGTTAGGACGCGTTTATCTCCGAACAGAAAGGCATGATCGTGCCGAAC
TTTGTCTTATGGCAAGCCTCAAGCTCAACCCTTTCTTGTGGATGTCATTCGAGCTTTTGT
GTCAGGCTGGAAAAAAGCCCGATCCAGACGAAGTATTCAATGTTAATAATCTTCATAGTT
TTTCTGGATGTCGTTCACATATTCCTTCAGTGTCGCCAATTAATGGGTCAAACCATCAAC
ATCTGCAGCAACCGCATACGATACTACGAAGAAAAAGCATTTCTAAGGATTTAGAATTAG
AAAACAGCGCTCCAGATGCAGCCATGATGTTGCGTTTGACAAGGCACACTCAGAATCGTA
GTTACCTCACCGAGACTACCCAACAGCATTCCGCCCCTGTTCCAATGTCAGTCACTCCGT
CTTCAGCGTTTTCTATGAAATCTGGCTTCCCGACTCCCATGGGCCAGAAGTCGCAAACTC
CTGTGACTTCTGCTAAATCTGTTCTACTGAACGTCAATTCAGAGCACTTGGTTACGCCTC
CTCCGTCCAGGGTTGACTTTGCAGGCATTATAAGTACAAGCGGAAGCCTGAAACCTCTGC
CGTCTTCAGCTGCATCCCAGAGAGATACTACAATCGGATCTCCTGGCAGTGAATTTTTAA
GGTCTACACCGGCTGGAGATCACCGTAGTGACTGGGATAGTTCGATTGACTCCTTTTCTT
GCATCGCCAGCTCTGCCATGCGCCGGTCAACCAGAACGCAACAGCTCATAGGTAGAAGTC
TCATCGGTGGACCGACTTCCATGAGTCCATTGACGCCGAGTTTTGGAGTGCTGCCATTGG
CAGAGACACCCAGTCCAGCTACAGAAAGGGCTTTGTCCATGGTGACTCCAGCAGATACAG
CTCTTCAGGGTGATATTATGGCACCTACTAAGAAAATGATGACTAGGCAGTCGAGAAAAC
CTCATTCTGCCGACTTAGGGTTGAATCAGGGTCCAGGGAAATTGAACTTTTCATCAGAAA
ACAGTCACAGGCTGACACAGAGCAACGCTAACACAACAAATATGAGCCAGCTTTCAACTC
CGTCCAATCAACAGATGGCACCGGTCCGAAGAAGCACGAGAATTTTTGCCAATGCCGCAA
ATACCATAAAGGAAAACACAAAGACGGGGAGGTCAAAGTTTCACCAGCCGAAGTCAGCGC
TCAAGCGTAATGCCAGGTCCAGGCAAGCTAATACCAAATCGGTGAGGGATTTATCTGAGG
AGATCAGCAAAGCTGACGCACAATCCTGTGAAAAACAACTACATTCAAATGCAGTGGCAA
ACAGTCAGTCACACGCTCTAATGCTGGCCACACAGAAATCAGCAGTGGAAGGTCTGATGT
CATTGCTGCGAGATATGGCCTACGCCTTCTCTGCCCTCTGTCAGTACGATTGTCGCGAAG
CAATATGCAGCTTTAATAATTTACCTCATCACCATAGAAATACAGGCTGGGTGCTGTCTT
CCCTCGGTCGAGCTCATTTTGAATTGACTGAGTATAATGAGGCAGCAAACATCTTCAAGG
AGCTCCACCTTTTAGCACCACATTACTTCAGAGGTTTAGAAATTTACAGCACAACCCTGT
GGCATTTGAAGCGAGAGGTTGAGCTTTCTGCCCTAGCTCACGACATGAAAAATTTAGATC
AGCTGTGTCCAGAGACGTGGTGCGCCGTGGGAAACTGCTTTTCTTTGCAACGAGACCATA
CGTCAGCAGCCAGCTTCTTTCACCGTGCCGTCCAGCTAGACTCCAACTGTTCCTACGCAT
ACACCCTTCTGGGTCATGAGCTTGGACTTACAGATGACCTCGATGGTGCCTTGACCTGCT
ATAGAAATGCCGTTCGCTGTAATCCACGCCACTACAATGCTTGGTATGGCATCGGGACTA
TATACTACAAGCAAGAAAAATTTAAGATAGCGGAGCTCCACTTTAGAAAGGCACTTGCTA
TACATCCCCATAGTTCAGTTTTACTCTGTCATATAGGTATAGCCCAGCATGCTCTTAAGC
AGACAACGCTCGCTTTACGTACACTCAATGCCGCCGTTGAAATGGAGCCACGTAACCCAC
TATGCAAGTTTCACAGAGCGACCGTCTTGTTCGCGGCTGAGCGCTACCAAGATGCCTTGG
AAGAGCTGCTTGAGTTAATGCAAATTGTGCCAAAAGAAAGTCTCGTGTATTTTTTGTTGG
GCAAGGTTTACAAAAAGTTGCGCAAGAACCACTTGGCGGTCATCAGTTTTTCTTGGGCCA
TGGAGCTGGACCCAAAAGGAGCAAATAACCAGATCAAGGAGGCAATTGACAAGCAAAACT
TACCGGATGACGATGAACAGTCTGAGGAGGAAACGGGAGAAGGTAGCATATTGGACTCGA
GTCTTTTAGATACAGATAATAACACTGTCGAACGACAGGATGGAGGTTTGTTTCAGGAAA
GTGATATTCAGCAGGATTTTCAAGACAGGCGGCGGCAGCATGACAGCAGCGGAGACCTGC
TTCATCACGACAGCGATGAAAGGGATTTGAGAGGAATAAGTTGTAAAGCAGTTATTTGGA
GCAAGGAAACACAGCACACCAGGTTATACGGTAATGGATGCAATTTGGGCCTTGGAATTT
TTTTCGTTGCTATTTAGTGGCAGTCCGATTACCAAGTAACTCTTTGTCCATATTTATTAT
TTGACCTATTTGTATTGTTGTTATTTTTGTAGTATCATATTAGATTACTGTACACATAGA
CCGGGTGTAATACTATAACTGATGTTAGGTCTATTTCGCTGCCCTACAAATACAATCTGT
GTACCACATGTGCTGTTTCTTTCAACGAAACTGTAGTGTGGTGGTGTGTCTCTAAAATGT
CTTGAGGCAACAATAAACGAGTGGTTTTAACAAAAACATGTTAATTAAGATTTGGGAGTC
GCCATCTAGCATACAGAAGGTTACTTCAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[9-193] 1.3E-40 - T[589-665] 7.4E-22 - T[667-798] 4.4E-45 - T[799-902] 9.0E-32 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[45-103] 3.14E-17 - T[135-178] 3.14E-17 - T[589-661] 3.14E-17 - T[701-904] 7.59E-38 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[137-170] 6.933 - T[633-666] 8.142 - T[701-734] 8.673 - T[735-768] 8.85 - T[769-802] 11.623 - T[803-836] 7.434 - T[837-870] 6.284 - T[871-904] 9.647 |
| SMART |
TPR_repeat (IPR019734) - T[137-170] 1.3 - T[633-666] 4.8 - T[701-734] 0.018 - T[735-768] 0.021 - T[769-802] 5.8E-6 - T[803-836] 2.7 - T[837-870] 47.0 - T[871-904] 0.29 |
| Pfam |
TPR_repeat (IPR019734) - T[140-168] 0.028 - T[873-903] 0.1 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[633-904] 39.173 |
| Pfam |
TPR_1 (IPR001440) - T[770-801] 2.4E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CDC23_HUMAN | 30.435 % | 109 | 1.49E-24 |
| CDC27_HUMAN | 49.578 % | 561 | 0 |
