- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S13.g02720.02.t
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
S13 [565,488 / 570,450]
Amino acid sequence
Length: 951
>Harore.CG.MTP2014.S13.g02720.02.p
MGSRRLAKLQFLGILCTCLLSLTEGFFPLKSENLKMIKPAKGCMFGNRYHTAGSSWHPNL
GFPFGVMYCIRCNCVKYAVAGRSKKELTKVVCHDVRKDCPPVSCKGAKVQRGECCKTCPE
ESVAEKSFPSSSKWDQLDFDSKFLLEKTLNDDEDRVEKSASSKQFVALLTNEEREQKSYL
ARATLTLQRGNLHFSIHHPNSSKPELVELVDESNSILYSHQIRSFKLRESLACGVWRNLP
KNIIHALNEGHLILRLTIRNSRDNPSSDKALYASGIIITHRALYSETFSSQLYPDQDGGS
GAIVMMTFGRNFKNINFAVIHRYVWPQDNRRRRNDQSIHISLELKNENGDTLRRTEKKVS
QLQNEFADVWNTNSDMLRSLGKGSLHLVMEAQQGRRGDKQRFVGNITVKATCNLLQAVLS
GSNCKPTTNTGSVGSAVFNVNSDNTISYQVFLSGLSSEVTLLQMTAAYTKKRSRVILDLT
PQFHNGVSEGLLKEVSAKELHSLLSDKVAVMAQTKANKQCEINGNVASLLYSGHLTRYHG
IPIPLSGSLVVPPVNTGAGGHAWLQLDDNCHLHYEIVVAGLSKDSDASVSAHLHGLAEIA
GYEPTHKKLLKGFYGTEARGILKEINKELYEIMNNGSAFVQVATKRNPNGEIRGRVHIPN
TCMKVDDYSEKKLDDYDKNATPVSASMEHDAIVHDSAGPQEIQSLQDSLQEEAESCYFEG
VWHNHDKEWSPVYDTKCTSCICEHGNVLCNPVNCPSLSCLYPVVIESECCPVCQDEFSTV
LGDVEKKEESYSIGSIIPLENQKTLGYEETELGNSGGCFENGENIPRPYGSSWHPVIHPF
GQITCVVCTCHYNGEIKCEKVQCPATPCQNPVRENPGDCCKVCPDNRFENKDRITTDERW
MQDGASQAMCTFGKRLHVVGASWNPYVHNFGKLKRVPEMRSKLSKHTKRLR
Nucleotide sequence
Length: 2,856
>Harore.CG.MTP2014.S13.g02720.02.t
ATGGGATCTCGTCGATTAGCGAAGTTGCAATTTCTCGGAATTTTGTGCACATGCCTTCTG
AGCTTGACTGAAGGGTTCTTTCCGTTGAAATCAGAAAATTTGAAGATGATAAAACCAGCT
AAAGGATGTATGTTTGGAAATCGCTATCATACAGCAGGGTCGTCGTGGCATCCCAATCTA
GGTTTCCCGTTTGGAGTCATGTATTGCATCAGATGCAATTGCGTGAAGTATGCGGTTGCA
GGCAGAAGCAAAAAAGAACTTACTAAAGTCGTCTGCCACGATGTGCGTAAGGACTGTCCT
CCTGTTTCGTGCAAAGGGGCAAAAGTACAAAGGGGCGAATGTTGCAAAACTTGTCCTGAA
GAATCGGTGGCTGAAAAAAGTTTCCCATCGTCATCAAAATGGGACCAATTAGATTTTGAC
TCTAAATTTCTCCTCGAAAAAACTCTAAATGACGACGAAGATCGAGTTGAAAAGAGCGCT
TCTAGCAAACAATTCGTCGCTCTGCTGACAAATGAGGAGAGAGAACAGAAGTCGTATTTG
GCTAGAGCAACCCTTACACTTCAGCGTGGCAACTTGCATTTCTCCATACATCATCCAAAT
TCGTCCAAACCTGAGCTGGTCGAACTTGTCGATGAAAGCAACTCAATCTTATACAGCCAC
CAGATCAGAAGTTTTAAATTAAGAGAATCTCTTGCATGCGGGGTTTGGCGAAATCTTCCA
AAAAATATCATCCACGCTTTGAACGAAGGACATCTCATCTTGAGATTAACCATACGAAAC
AGCAGGGATAATCCGTCGTCTGATAAAGCGTTATACGCAAGCGGCATTATAATCACTCAT
AGAGCGCTGTATTCCGAGACTTTCAGTTCCCAGTTGTATCCTGATCAAGACGGTGGGAGC
GGAGCTATAGTCATGATGACGTTTGGAAGAAATTTCAAAAATATCAATTTTGCGGTGATC
CATAGATACGTATGGCCGCAAGACAATCGTAGACGAAGAAATGACCAGTCTATCCACATA
TCCTTGGAATTGAAAAACGAAAACGGAGATACTTTGCGAAGAACTGAGAAGAAAGTATCG
CAGTTGCAAAATGAATTTGCTGATGTTTGGAATACCAACTCCGATATGTTAAGATCACTA
GGCAAAGGCTCGTTGCATCTAGTTATGGAAGCGCAGCAGGGTAGAAGAGGGGATAAACAG
AGATTTGTGGGAAATATCACAGTGAAAGCCACATGTAATTTGTTGCAAGCAGTTCTATCC
GGAAGCAATTGCAAACCAACAACTAATACCGGTTCTGTGGGTTCCGCCGTATTCAATGTT
AATTCTGACAACACGATATCTTACCAGGTTTTTTTATCGGGCTTGTCTAGCGAAGTGACG
TTACTGCAAATGACTGCAGCTTATACCAAGAAGAGATCAAGAGTGATCCTAGACTTAACG
CCTCAATTTCATAATGGCGTCTCTGAAGGTTTGCTCAAAGAAGTTTCCGCGAAGGAGCTG
CATTCTTTGCTCAGTGACAAAGTCGCAGTTATGGCGCAGACTAAAGCTAACAAACAATGC
GAAATAAACGGAAACGTAGCATCACTGCTCTACAGCGGACATTTGACAAGATATCACGGT
ATACCGATTCCCCTGTCTGGTTCTCTCGTCGTTCCTCCTGTTAACACTGGTGCTGGTGGA
CATGCATGGCTTCAGCTGGATGATAATTGTCACTTGCATTATGAGATTGTTGTCGCAGGT
CTCAGCAAAGATTCGGATGCATCGGTATCAGCTCACTTACACGGTTTAGCAGAAATCGCT
GGCTACGAGCCAACTCATAAAAAGCTGCTCAAAGGATTTTACGGAACTGAGGCTCGCGGA
ATATTAAAAGAAATCAATAAAGAACTTTACGAAATCATGAACAATGGTTCGGCATTCGTC
CAGGTTGCAACTAAGAGAAATCCTAACGGTGAAATACGCGGCCGAGTCCATATACCCAAC
ACCTGCATGAAAGTGGATGATTACAGTGAAAAGAAATTGGACGACTATGACAAAAACGCG
ACTCCAGTGTCTGCCTCCATGGAACACGATGCGATCGTACATGATTCGGCCGGTCCCCAA
GAAATACAATCGTTACAAGACAGCTTGCAAGAAGAAGCAGAATCCTGCTACTTCGAAGGC
GTATGGCATAATCACGATAAAGAATGGTCTCCCGTATACGACACGAAATGTACCTCGTGT
ATTTGCGAACATGGAAATGTTCTCTGCAACCCAGTCAACTGCCCATCTCTCTCGTGCCTA
TACCCAGTAGTAATTGAATCTGAATGTTGTCCGGTTTGCCAGGATGAATTTTCTACCGTT
TTGGGAGACGTAGAAAAGAAAGAGGAGTCCTATTCTATAGGTTCAATTATTCCATTAGAA
AATCAAAAAACTTTAGGATATGAAGAAACGGAACTTGGAAATTCAGGAGGTTGTTTTGAA
AACGGAGAAAATATTCCTCGTCCCTACGGTTCATCCTGGCATCCAGTCATCCACCCTTTT
GGTCAAATCACTTGCGTCGTTTGTACCTGCCACTACAACGGCGAAATAAAATGCGAAAAG
GTTCAATGCCCCGCAACACCTTGTCAAAACCCTGTTCGTGAAAACCCTGGAGATTGCTGT
AAAGTTTGTCCTGATAATCGATTTGAGAACAAGGATAGAATAACTACGGACGAAAGATGG
ATGCAAGATGGAGCTAGTCAGGCAATGTGTACCTTCGGAAAGAGACTTCATGTTGTAGGC
GCAAGTTGGAATCCGTACGTGCATAATTTCGGAAAGCTCAAGCGTGTTCCGGAAATGCGT
TCGAAATTGTCCAAACATACCAAAAGACTGCGATAG
| PIRSF |
Chordin (IPR016353) - T[1-947] 0.0 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[41-119] 8.997 - T[714-774] 11.063 - T[816-884] 9.962 |
| Pfam |
VWF_dom (IPR001007) - T[43-118] 3.5E-8 - T[716-773] 1.3E-7 - T[828-883] 1.4E-7 |
| SMART |
VWF_dom (IPR001007) - T[43-118] 0.18 - T[716-773] 9.6E-9 - T[818-883] 0.0027 |
| ProSiteProfiles |
CHRD (IPR010895) - T[161-282] 20.583 - T[284-408] 15.58 - T[411-531] 21.189 - T[537-661] 21.689 |
| SMART |
CHRD (IPR010895) - T[413-528] 5.9E-30 - T[539-658] 4.0E-29 |
| Pfam |
CHRD (IPR010895) - T[415-526] 2.4E-9 - T[543-656] 9.7E-20 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[737-773] . - T[845-883] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 32.185 % | 456 | 1.29E-145 |
