- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S13.g02720.01.t
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
S13 [565,485 / 570,886]
Amino acid sequence
Length: 985
>Harore.CG.MTP2014.S13.g02720.01.p
KMGSRRLAKLQFLGILCTCLLSLTEGFFPLKSENLKMIKPAKGCMFGNRYHTAGSSWHPN
LGFPFGVMYCIRCNCVKYAVAGRSKKELTKVVCHDVRKDCPPVSCKGAKVQRGECCKTCP
EESVAEKSFPSSSKWDQLDFDSKFLLEKTLNDDEDRVEKSASSKQFVALLTNEEREQKSY
LARATLTLQRGNLHFSIHHPNSSKPELVELVDESNSILYSHQIRSFKLRESLACGVWRNL
PKNIIHALNEGHLILRLTIRNSRDNPSSDKALYASGIIITHRALYSETFSSQLYPDQDGG
SGAIVMMTFGRNFKNINFAVIHRYVWPQDNRRRRNDQSIHISLELKNENGDTLRRTEKKV
SQLQNEFADVWNTNSDMLRSLGKGSLHLVMEAQQGRRGDKQRFVGNITVKATCNLLQAVL
SGSNCKPTTNTGSVGSAVFNVNSDNTISYQVFLSGLSSEVTLLQMTAAYTKKRSRVILDL
TPQFHNGVSEGLLKEVSAKELHSLLSDKVAVMAQTKANKQCEINGNVASLLYSGHLTRYH
GIPIPLSGSLVVPPVNTGAGGHAWLQLDDNCHLHYEIVVAGLSKDSDASVSAHLHGLAEI
AGYEPTHKKLLKGFYGTEARGILKEINKELYEIMNNGSAFVQVATKRNPNGEIRGRVHIP
NTCMKVDDYSEKKLDDYDKNATPVSASMEHDAIVHDSAGPQEIQSLQDSLQEEAESCYFE
GVWHNHDKEWSPVYDTKCTSCICEHGNVLCNPVNCPSLSCLYPVVIESECCPVCQDEFST
VLGDVEKKEESYSIGSIIPLENQKTLGYEETELGNSGGCFENGENIPRPYGSSWHPVIHP
FGQITCVVCTCHYNGEIKCEKVQCPATPCQNPVRENPGDCCKVCPDNRFENKDRITTDER
WMQDGASQAMCTFGKRLHVVGASWNPYVHNFGKLKCITCTCIQDEVKGVFRKCVRNCPNI
PKDCDRVSRSVHECCAKCIKRKLVT
Nucleotide sequence
Length: 3,333
>Harore.CG.MTP2014.S13.g02720.01.t
AAAATGGGATCTCGTCGATTAGCGAAGTTGCAATTTCTCGGAATTTTGTGCACATGCCTT
CTGAGCTTGACTGAAGGGTTCTTTCCGTTGAAATCAGAAAATTTGAAGATGATAAAACCA
GCTAAAGGATGTATGTTTGGAAATCGCTATCATACAGCAGGGTCGTCGTGGCATCCCAAT
CTAGGTTTCCCGTTTGGAGTCATGTATTGCATCAGATGCAATTGCGTGAAGTATGCGGTT
GCAGGCAGAAGCAAAAAAGAACTTACTAAAGTCGTCTGCCACGATGTGCGTAAGGACTGT
CCTCCTGTTTCGTGCAAAGGGGCAAAAGTACAAAGGGGCGAATGTTGCAAAACTTGTCCT
GAAGAATCGGTGGCTGAAAAAAGTTTCCCATCGTCATCAAAATGGGACCAATTAGATTTT
GACTCTAAATTTCTCCTCGAAAAAACTCTAAATGACGACGAAGATCGAGTTGAAAAGAGC
GCTTCTAGCAAACAATTCGTCGCTCTGCTGACAAATGAGGAGAGAGAACAGAAGTCGTAT
TTGGCTAGAGCAACCCTTACACTTCAGCGTGGCAACTTGCATTTCTCCATACATCATCCA
AATTCGTCCAAACCTGAGCTGGTCGAACTTGTCGATGAAAGCAACTCAATCTTATACAGC
CACCAGATCAGAAGTTTTAAATTAAGAGAATCTCTTGCATGCGGGGTTTGGCGAAATCTT
CCAAAAAATATCATCCACGCTTTGAACGAAGGACATCTCATCTTGAGATTAACCATACGA
AACAGCAGGGATAATCCGTCGTCTGATAAAGCGTTATACGCAAGCGGCATTATAATCACT
CATAGAGCGCTGTATTCCGAGACTTTCAGTTCCCAGTTGTATCCTGATCAAGACGGTGGG
AGCGGAGCTATAGTCATGATGACGTTTGGAAGAAATTTCAAAAATATCAATTTTGCGGTG
ATCCATAGATACGTATGGCCGCAAGACAATCGTAGACGAAGAAATGACCAGTCTATCCAC
ATATCCTTGGAATTGAAAAACGAAAACGGAGATACTTTGCGAAGAACTGAGAAGAAAGTA
TCGCAGTTGCAAAATGAATTTGCTGATGTTTGGAATACCAACTCCGATATGTTAAGATCA
CTAGGCAAAGGCTCGTTGCATCTAGTTATGGAAGCGCAGCAGGGTAGAAGAGGGGATAAA
CAGAGATTTGTGGGAAATATCACAGTGAAAGCCACATGTAATTTGTTGCAAGCAGTTCTA
TCCGGAAGCAATTGCAAACCAACAACTAATACCGGTTCTGTGGGTTCCGCCGTATTCAAT
GTTAATTCTGACAACACGATATCTTACCAGGTTTTTTTATCGGGCTTGTCTAGCGAAGTG
ACGTTACTGCAAATGACTGCAGCTTATACCAAGAAGAGATCAAGAGTGATCCTAGACTTA
ACGCCTCAATTTCATAATGGCGTCTCTGAAGGTTTGCTCAAAGAAGTTTCCGCGAAGGAG
CTGCATTCTTTGCTCAGTGACAAAGTCGCAGTTATGGCGCAGACTAAAGCTAACAAACAA
TGCGAAATAAACGGAAACGTAGCATCACTGCTCTACAGCGGACATTTGACAAGATATCAC
GGTATACCGATTCCCCTGTCTGGTTCTCTCGTCGTTCCTCCTGTTAACACTGGTGCTGGT
GGACATGCATGGCTTCAGCTGGATGATAATTGTCACTTGCATTATGAGATTGTTGTCGCA
GGTCTCAGCAAAGATTCGGATGCATCGGTATCAGCTCACTTACACGGTTTAGCAGAAATC
GCTGGCTACGAGCCAACTCATAAAAAGCTGCTCAAAGGATTTTACGGAACTGAGGCTCGC
GGAATATTAAAAGAAATCAATAAAGAACTTTACGAAATCATGAACAATGGTTCGGCATTC
GTCCAGGTTGCAACTAAGAGAAATCCTAACGGTGAAATACGCGGCCGAGTCCATATACCC
AACACCTGCATGAAAGTGGATGATTACAGTGAAAAGAAATTGGACGACTATGACAAAAAC
GCGACTCCAGTGTCTGCCTCCATGGAACACGATGCGATCGTACATGATTCGGCCGGTCCC
CAAGAAATACAATCGTTACAAGACAGCTTGCAAGAAGAAGCAGAATCCTGCTACTTCGAA
GGCGTATGGCATAATCACGATAAAGAATGGTCTCCCGTATACGACACGAAATGTACCTCG
TGTATTTGCGAACATGGAAATGTTCTCTGCAACCCAGTCAACTGCCCATCTCTCTCGTGC
CTATACCCAGTAGTAATTGAATCTGAATGTTGTCCGGTTTGCCAGGATGAATTTTCTACC
GTTTTGGGAGACGTAGAAAAGAAAGAGGAGTCCTATTCTATAGGTTCAATTATTCCATTA
GAAAATCAAAAAACTTTAGGATATGAAGAAACGGAACTTGGAAATTCAGGAGGTTGTTTT
GAAAACGGAGAAAATATTCCTCGTCCCTACGGTTCATCCTGGCATCCAGTCATCCACCCT
TTTGGTCAAATCACTTGCGTCGTTTGTACCTGCCACTACAACGGCGAAATAAAATGCGAA
AAGGTTCAATGCCCCGCAACACCTTGTCAAAACCCTGTTCGTGAAAACCCTGGAGATTGC
TGTAAAGTTTGTCCTGATAATCGATTTGAGAACAAGGATAGAATAACTACGGACGAAAGA
TGGATGCAAGATGGAGCTAGTCAGGCAATGTGTACCTTCGGAAAGAGACTTCATGTTGTA
GGCGCAAGTTGGAATCCGTACGTGCATAATTTCGGAAAGCTCAAGTGTATAACATGTACT
TGCATTCAAGATGAAGTGAAAGGCGTGTTCCGGAAATGCGTTCGAAATTGTCCAAACATA
CCAAAAGACTGCGATAGAGTGTCACGGAGCGTGCATGAGTGCTGTGCTAAGTGCATAAAA
AGAAAACTGGTCACTTAATAACGATAACGGAAATGTGAGATTTTTAAGACTTCGATACAC
CATAAAGATTTGTATTTTATTCTTTGTAACATGTGTTTTGCCTCCGAGGTCTCCTATTGC
GCGTAGTTTATAGTAGATGTAGCATATTTCTCTAAAATGTGAGATTCTAAAAACTTCGAT
GCACGATAAAGATCTGAATTTTATTCTGTGTAACATCTGTATTGCCTCTGAGGTCTCTTG
TTAGCGACACAGCAAAGTACGGATGCTTTGTATTCCAAGAAGTGTATAGTATATGTAGTA
TTTTTCTTTGTAAATGAACTAAAACGAGATTTTTGATGTTCTGTAAGGAATATTTGCGAT
GTCGCTTGAAGATTATGCTGTACAATATTTTTT
| PIRSF |
Chordin (IPR016353) - T[1-985] 0.0 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[42-120] 8.997 - T[715-775] 11.063 - T[817-885] 9.962 |
| SMART |
VWF_dom (IPR001007) - T[44-119] 0.18 - T[717-774] 9.6E-9 - T[819-884] 0.0027 - T[911-978] 2.6 |
| Pfam |
VWF_dom (IPR001007) - T[44-119] 3.6E-8 - T[717-774] 1.4E-7 - T[829-884] 1.5E-7 |
| ProSiteProfiles |
CHRD (IPR010895) - T[162-283] 20.583 - T[285-409] 15.58 - T[412-532] 21.189 - T[538-662] 21.689 |
| SMART |
CHRD (IPR010895) - T[414-529] 5.9E-30 - T[540-659] 4.0E-29 |
| Pfam |
CHRD (IPR010895) - T[416-527] 2.5E-9 - T[544-657] 1.0E-19 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[738-774] . - T[846-884] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 31.865 % | 472 | 3.01E-151 |
