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TRANSCRIPT CARD

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  1. Region 'REG00000350' > 
  2. Region 'REG00000343' > 
  3. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S137.g07530.01.t

Possible name(s)

ARPC1A; ARPC1B; CIAO1

Gene model

Harore.CG.MTP2014.S137.g07530

Location

S137 [118,991 / 120,089]

Sequences

Amino acid sequence

Length: 365

>Harore.CG.MTP2014.S137.g07530.01.p
MAEVFKFGCQPICVHAWNANRTQIAICPNNNEVEIHEKCGKQWKLIHTLKEHTGRVTGID
WAAKSQRLVTCSSDRNAYVWTVDEQTKEWKPTLVILRINRAATCVKWSPNEDKFAVGSGA
RVISVCYFESENDWWVSKHIKKPIRSTILSIDWHPNNILIAAGSSDFKARVFSGYIKDIE
PKPSSTIWGKKMTFGNVMQEIACDGWVQGVKFSGSGDKMAIVSQDSAIRVVKGGNDAVVV
KASHLPFCDCAWITELSFVAVGHDCNPMLFVTDDNCSSLKFESKLDQVSQGGGAKSMSAM
DRFKMLDKKASTDTQGSEIRTKHKNSITQIVNYGPNKFSTSGMDGNVIIWDVKSLASSIA
GLRIA

Nucleotide sequence

Length: 1,098

>Harore.CG.MTP2014.S137.g07530.01.t
ATGGCTGAAGTATTCAAGTTTGGGTGCCAACCCATATGCGTACACGCTTGGAACGCAAAT
CGTACTCAGATCGCTATTTGCCCCAATAACAACGAGGTTGAGATCCACGAAAAGTGTGGA
AAACAATGGAAGTTGATTCACACTTTGAAGGAACACACAGGTCGTGTTACCGGGATCGAC
TGGGCTGCTAAGAGTCAGAGATTGGTGACTTGTTCGAGCGACCGTAACGCTTACGTTTGG
ACAGTGGACGAGCAGACGAAAGAGTGGAAGCCGACACTCGTAATTCTACGTATTAACCGT
GCCGCGACCTGCGTGAAATGGTCGCCAAACGAGGATAAGTTTGCTGTCGGTAGTGGCGCC
AGGGTGATATCGGTCTGCTACTTTGAATCCGAAAATGACTGGTGGGTCAGTAAGCACATA
AAAAAGCCCATACGTTCAACGATTCTCAGCATTGATTGGCATCCAAACAACATCTTGATT
GCGGCCGGCTCATCAGACTTTAAGGCTCGTGTGTTTTCAGGATACATCAAGGACATTGAA
CCGAAGCCTTCTTCTACGATCTGGGGAAAAAAGATGACGTTTGGGAACGTCATGCAAGAA
ATTGCCTGTGATGGCTGGGTTCAAGGGGTCAAATTTTCTGGGTCTGGAGATAAGATGGCT
ATTGTTTCCCAGGACAGCGCTATCAGGGTTGTCAAAGGAGGAAATGATGCTGTCGTTGTT
AAAGCCAGCCATCTTCCGTTCTGCGACTGTGCCTGGATAACCGAACTGAGCTTCGTCGCT
GTAGGGCACGACTGCAACCCAATGTTGTTTGTAACCGACGATAACTGCTCTTCCTTGAAG
TTCGAGAGCAAGCTTGATCAAGTTTCTCAAGGAGGCGGGGCGAAGAGTATGTCTGCAATG
GACCGTTTCAAGATGTTGGACAAGAAGGCATCGACCGACACTCAGGGGTCGGAAATCAGG
ACCAAACACAAGAATTCCATTACGCAGATTGTCAACTATGGTCCGAACAAATTCTCAACA
AGCGGTATGGATGGAAATGTCATTATCTGGGATGTCAAATCTCTGGCATCGTCCATTGCC
GGACTTCGTATTGCTTGA

InterProScan

PIRSF
ARPC1 (IPR017383) - T[1-357] 3.7E-143
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-352] 2.7E-141
PANTHER
ARPC1 (IPR017383) - T[2-363] 7.4E-146
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[10-283] 2.56E-43 - T[311-354] 2.56E-43
SMART
WD40_repeat (IPR001680) - T[42-81] 6.1E-8 - T[88-127] 4.2 - T[137-173] 0.55 - T[194-232] 7.0 - T[312-351] 3.8
Pfam
WD40_repeat (IPR001680) - T[43-80] 2.6E-4 - T[143-172] 0.063 - T[322-351] 0.22
ProSiteProfiles
WD40_repeat (IPR001680) - T[49-90] 11.21
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[49-90] 10.707

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ARC1A_HUMAN 57.143 % 420 4.04E-147
ARC1B_HUMAN 55.014 % 405 2.72E-141