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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'
  2. Transcript 'KH2012:KH.L34.6.v1.C...'
  3. Transcript 'Boschl.CG.Botznik201...'
  4. Transcript 'Phfumi.CG.MTP2014.S8...'
  5. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S12.g13786.01.t

Possible name(s)

RAB11FIP1; RAB11FIP2; RAB11FIP5

Location

S12 [674,831 / 679,603]

Sequences

Amino acid sequence

Length: 439

>Harore.CG.MTP2014.S12.g13786.01.p
MLGPTDITVIVHKAKNLLIKGKSSNDAYATMEFGKTKYATNVIESSINPEWHQECQFEMP
SGGVLDKLFVTITIFNKQHGKFGLQNDDFIGQVEIPLSSIKCTDNKETTKWYNLQHRNPK
KEKKNRGQVEVSFKYLSKEKFALLPDKKSPLNLKNLKQKFRRRSEDEDSGVGYESNLRKG
QSLDNLHRTPSNSSDRSSNSKRRLSLVQSARGLVKFPNRIDLGNNSKSVSVEVLNNPEIH
RVSSLKRSSSGNGRQDITKQHVRNRSMPDTSLRALTSQGNDRNSPNICINGSHLYISDSG
NNSMNTSLECLQQNNSGFNRDTDIAELHASHNENQSNSRRGTYSPESSSSNLSILYKPKK
HYRLDVKELCKVSTIHEDATVAFQNMSRDKLLELCIKQHNTIAIERKQARQLEDYIDTLL
VKVMMLKPQILDRSTCTKM

Nucleotide sequence

Length: 1,320

>Harore.CG.MTP2014.S12.g13786.01.t
ATGTTAGGTCCCACCGATATCACTGTCATAGTACATAAGGCAAAGAACCTTTTGATCAAA
GGTAAATCCAGCAATGATGCCTATGCCACTATGGAATTTGGCAAAACGAAATACGCTACG
AACGTCATCGAATCTTCAATCAATCCAGAATGGCATCAAGAATGTCAGTTCGAAATGCCA
TCAGGAGGAGTGCTCGACAAACTTTTTGTTACTATAACGATCTTCAACAAGCAGCATGGA
AAATTCGGTCTTCAAAACGATGATTTTATTGGCCAGGTTGAAATTCCACTGAGTTCCATA
AAATGCACAGATAACAAAGAAACAACAAAATGGTATAACCTACAGCATAGAAATCCTAAA
AAAGAGAAGAAAAACAGAGGTCAAGTGGAAGTCAGCTTCAAGTACTTGAGCAAAGAAAAG
TTTGCCTTATTGCCCGATAAAAAGAGTCCTCTGAATCTGAAAAATTTGAAGCAGAAATTT
CGTCGTCGCTCGGAAGATGAAGACTCCGGAGTCGGTTATGAAAGCAATCTTCGAAAAGGG
CAATCTTTGGATAATTTACACCGCACACCGTCCAACTCCAGTGATAGATCGTCTAATTCA
AAACGAAGGCTGTCTTTGGTCCAATCTGCTAGAGGCCTGGTTAAATTTCCAAATAGAATC
GATCTTGGCAACAACAGCAAGTCTGTCAGCGTAGAAGTACTCAATAATCCTGAAATTCAC
AGGGTTTCATCCCTGAAGCGTTCTAGTTCTGGTAATGGAAGACAAGACATTACAAAGCAG
CATGTAAGGAATAGATCAATGCCAGATACTTCCTTGCGTGCGCTGACCTCTCAAGGCAAC
GATAGAAACTCGCCAAACATATGTATAAATGGCTCGCACTTATATATTTCAGATTCAGGT
AACAACAGTATGAATACTTCATTGGAATGCCTGCAACAGAATAACTCTGGCTTTAACCGG
GACACAGACATCGCAGAACTGCATGCATCACATAATGAAAATCAGTCTAATTCAAGACGT
GGCACCTACTCACCGGAGTCTTCGAGTTCTAACCTGTCTATTCTGTATAAGCCAAAAAAG
CATTATAGACTTGATGTAAAAGAATTATGTAAGGTTTCTACCATTCACGAGGATGCTACA
GTTGCTTTCCAGAATATGAGTCGCGATAAACTTCTTGAGCTTTGTATTAAGCAACATAAC
ACTATTGCCATAGAAAGAAAACAAGCCAGACAACTCGAGGACTATATAGACACTCTTCTC
GTCAAGGTAATGATGCTGAAACCGCAAATATTGGATAGGTCCACGTGTACAAAGATGTAA

InterProScan

ProSiteProfiles
C2_dom (IPR000008) - T[1-94] 11.389
PANTHER
FIP_classI (IPR037789) - T[4-324] 1.6E-51 - T[330-434] 1.6E-51
Gene3D
C2_domain_sf (IPR035892) - T[4-135] 7.4E-26
SMART
C2_dom (IPR000008) - T[6-109] 6.1E-14
Pfam
C2_dom (IPR000008) - T[7-114] 1.8E-19
Pfam
Rab-bd_FIP-RBD (IPR019018) - T[387-431] 8.6E-7
SUPERFAMILY
FIP-RBD_C_sf (IPR037245) - T[406-433] 1.18E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RFIP1_HUMAN 34.783 % 85.9 9.56E-18