- Molecular Tool 'Titf>Otx (Yoshida2017)' >
- Region 'REG00001414' >
- Molecular Tool 'FGF8/17/18>Su(H)-DBM (Stolfi 2011)' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S12.g03265.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S12 [543,335 / 544,532]
Amino acid sequence
Length: 398
>Harore.CG.MTP2014.S12.g03265.01.p
MSKIESTDYKIWKKNTPFLYDFLVTHSLEWPSLTVEWLPDLTRPETKDFSVHRLILGTHT
TEEQNHLIILAVPFPSLQAEFDATSYDSEKDEFGGYVAKSGKIETEIKINHDGEVNRARH
MPQIPCVIATKPPSSDVLVFDYTKHPSKPDASGKCNPDLRLKGHQKEGYGLSWNPNSTGL
LLSSSNDHTVCMWDVNGATKDNKNLTALNTFKGHSDIVEDVCWHCLHDSLFASVSDDRKL
MVWDSRSNSTDQPIHAIVAHDAEVNCVSFNPYNEYILATGSSDKTVNLWDLRKLDSNLHT
FRNHDDEVFQVHWSPHRENILASGSSDQKLNVWDVKRVNKQGSEFKEESPELLFSHRGHS
AKISDFSWNCNQPWTICSVSEDNIMQMWTIASNICKDD
Nucleotide sequence
Length: 1,197
>Harore.CG.MTP2014.S12.g03265.01.t
ATGTCTAAAATTGAGAGTACCGACTATAAAATATGGAAGAAAAACACGCCTTTTCTCTAT
GACTTTCTGGTGACTCATTCCTTGGAGTGGCCGAGCCTAACTGTTGAGTGGTTACCAGAT
CTTACCCGACCTGAAACAAAAGACTTTTCTGTTCATCGTCTTATACTTGGAACTCACACA
ACAGAAGAGCAAAATCACTTGATTATTTTGGCTGTTCCATTTCCCAGCCTGCAAGCTGAA
TTCGATGCAACCAGTTACGACAGTGAAAAGGATGAGTTCGGTGGATACGTCGCCAAGAGC
GGTAAGATCGAAACAGAAATCAAAATAAACCATGACGGCGAAGTCAACCGTGCACGACAC
ATGCCTCAGATACCGTGCGTGATAGCCACCAAACCACCTTCGAGCGACGTGTTGGTATTT
GATTACACGAAACACCCTAGTAAGCCAGATGCAAGCGGTAAATGCAACCCGGATCTACGA
TTGAAAGGCCACCAGAAAGAAGGGTATGGACTGTCATGGAATCCGAACAGCACCGGACTA
TTGCTGAGTTCTTCTAATGACCATACAGTATGCATGTGGGACGTCAACGGTGCCACTAAA
GATAACAAGAACTTAACGGCCTTGAACACTTTTAAAGGTCACAGTGATATAGTTGAAGAT
GTGTGCTGGCACTGTCTTCACGATAGCTTGTTTGCCTCTGTCTCAGACGATCGCAAGTTG
ATGGTTTGGGATTCCAGATCAAATTCTACCGATCAACCTATTCACGCGATCGTAGCCCAC
GATGCAGAAGTGAACTGTGTTTCTTTCAACCCATACAACGAATATATCCTCGCTACCGGG
TCCTCGGATAAAACCGTGAATCTTTGGGATTTACGTAAGCTCGATTCGAATCTGCATACA
TTCAGAAATCATGACGACGAAGTATTCCAAGTTCATTGGTCTCCGCACAGAGAAAATATT
TTGGCCTCCGGTAGCAGTGATCAAAAATTGAACGTATGGGACGTCAAACGAGTTAATAAA
CAAGGCAGTGAGTTCAAAGAGGAGTCTCCTGAACTTCTCTTCTCGCACAGAGGTCATTCC
GCAAAAATATCAGATTTTTCGTGGAATTGTAATCAACCGTGGACGATATGCTCTGTTAGT
GAAGATAATATCATGCAGATGTGGACCATAGCTAGCAACATTTGTAAAGATGATTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-398] 7.6E-144 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[9-75] 5.8E-25 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[100-388] 1.11E-51 |
| SMART |
WD40_repeat (IPR001680) - T[154-194] 3.1E-6 - T[204-244] 1.2E-6 - T[250-290] 3.0E-10 - T[294-334] 7.9E-8 - T[349-389] 0.0061 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[161-203] 11.778 - T[211-253] 10.074 - T[257-292] 13.984 - T[301-343] 13.583 |
| Pfam |
WD40_repeat (IPR001680) - T[161-194] 0.025 - T[208-244] 3.7E-4 - T[252-290] 2.8E-7 - T[296-334] 4.2E-4 - T[352-388] 0.24 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[161-398] 36.068 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[181-195] . - T[277-291] . - T[321-335] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[181-195] 9.3E-9 - T[277-291] 9.3E-9 - T[321-335] 9.3E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 26.587 % | 106 | 2.19E-25 |
| RBBP7_HUMAN | 64.573 % | 563 | 0 |
| RBBP4_HUMAN | 66.332 % | 582 | 0 |