- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S128.g13119.01.t
Possible name(s)
FOXD1; FOXD3; FOXD4
Gene model
Location
S128 [54,243 / 57,216]
Amino acid sequence
Length: 805
>Harore.CG.MTP2014.S128.g13119.01.p
MRQVSVRTLFNMTVQSSAESRSPVSVKAINLSSSSTSNSGLGVFPASNEQFSGEKFEFAQ
DSCKTVVNSRLADSVSRYDRTNWHSVSRARIMNPIEWSKSKLVKSSSDRVVDYQEDSPHL
QEESHREAGNLAWNSQKLPAEFRSKTTREQNLTSPREMTHTEQLSAIPSALDSLREMAAM
QYKKEYTPTGKPYEQLTPSISWSTKTGRDGDVSDANVTSPASQQTKIVTLQKDEEAKSPE
HTPASSSSLHENEVDNQKARTSVVNDEELSDDLDNAAENGIDSEVDVFEDELNITDKTSS
EDNSKEDANDKLVVKPPYSYIALITMSILQSPQKKLTLSGICEFIMNRFPYYREKFPAWQ
NSIRHNLSLNDCFVKVPREPGNPGKGNYWTMDPEAEDMFDNGSFLRRRKRFKRHNRDPLR
DHMIAAAVNGVVGPYSRPYGMGLTGQQAAAVAAAMNPYGYLGPPPASFLNQHHLMNRQAE
AMLFGLGGPTSAAALSHLNSSQQTGIFQPMLPQGASARCPPPNICSSTSMNPSNIPFPAT
SRSCIAPMMAASNLPPFRSSPSGNGSSKFSSAETPRPSGFSIDSIMARGDHHTKRSSKRT
RSDEESSGAEKLRRISQSSCSSSSSIPINRTENHASGVGDRCFISGSSPESVCNNLGDNL
SIPPSLRSISPGECASNAPIKHFHNTRHKQDESHSPSSIARYNQSSDENSFRSKIKECRP
NKSVLESSNSLNNYSASLGLSSIPRGTISQVTNFDNSGMLFSNLFTGSEQSSAAAAQVLM
NIEAAAKLYGGNQLLSAAVAGRWWV
Nucleotide sequence
Length: 2,418
>Harore.CG.MTP2014.S128.g13119.01.t
ATGCGTCAAGTTTCCGTGCGAACATTGTTTAATATGACTGTTCAGTCTTCAGCGGAATCT
CGGTCACCAGTTAGTGTTAAAGCAATCAATTTAAGTTCAAGCAGCACCAGCAACAGCGGT
CTCGGAGTTTTTCCAGCCTCCAATGAACAATTCAGTGGTGAAAAGTTTGAATTTGCACAA
GACTCTTGTAAAACTGTTGTAAATTCTAGACTCGCTGATAGTGTTTCCAGATACGATAGA
ACAAATTGGCATTCTGTCTCTCGAGCTAGAATTATGAACCCGATCGAATGGTCGAAATCA
AAACTGGTTAAGAGCTCTTCAGATCGAGTTGTTGATTATCAGGAAGATTCGCCACATCTT
CAAGAAGAATCACACAGAGAAGCCGGCAATTTGGCGTGGAATTCGCAAAAACTTCCTGCA
GAGTTTAGATCCAAAACAACTCGTGAACAAAATTTGACTTCCCCAAGAGAAATGACACAT
ACCGAGCAGCTTTCAGCGATACCTTCAGCTCTGGATTCTCTTCGAGAAATGGCCGCCATG
CAGTATAAAAAAGAATATACCCCAACCGGCAAACCGTATGAACAACTCACACCAAGCATA
TCGTGGTCTACCAAAACAGGTAGAGATGGTGATGTATCCGACGCAAATGTCACCTCCCCT
GCATCTCAACAAACAAAGATTGTTACACTACAGAAGGATGAGGAGGCTAAATCTCCCGAA
CACACGCCAGCAAGTTCTTCCTCTCTTCATGAGAACGAAGTGGACAATCAAAAAGCACGG
ACGTCGGTGGTCAATGACGAAGAATTGTCAGATGACTTAGACAATGCCGCGGAAAACGGT
ATTGATTCTGAAGTAGATGTTTTCGAGGACGAACTGAATATTACTGACAAAACTTCATCG
GAAGACAACTCAAAAGAAGATGCTAACGACAAGCTCGTAGTAAAACCTCCGTATTCTTAT
ATAGCTCTCATAACCATGTCGATACTGCAATCGCCACAGAAAAAACTTACACTGAGTGGC
ATTTGCGAATTCATCATGAATCGGTTTCCGTATTACCGCGAGAAATTTCCCGCATGGCAA
AACTCCATCCGCCACAATCTCTCCCTTAACGACTGTTTTGTCAAAGTACCGCGGGAACCG
GGCAACCCAGGCAAAGGCAATTACTGGACAATGGACCCCGAGGCGGAAGACATGTTCGAT
AATGGATCCTTCCTACGTCGCAGAAAGCGCTTCAAACGGCACAATCGAGACCCTTTACGC
GATCATATGATAGCTGCAGCTGTGAACGGTGTTGTGGGGCCTTATAGTCGACCCTATGGG
ATGGGTTTAACTGGACAGCAGGCCGCCGCTGTGGCAGCCGCCATGAACCCTTACGGATAT
CTAGGACCACCCCCCGCTTCATTTCTGAACCAACATCACTTGATGAATCGACAGGCCGAA
GCTATGTTATTTGGTCTCGGAGGACCAACGTCGGCTGCAGCACTGTCTCACTTAAATTCT
TCGCAACAAACTGGAATATTTCAGCCCATGCTACCGCAAGGTGCGAGTGCCCGTTGCCCA
CCTCCTAACATCTGTAGTTCGACTAGCATGAATCCATCGAATATTCCTTTTCCGGCAACC
AGCCGGAGCTGTATAGCTCCAATGATGGCTGCCAGCAATTTGCCGCCATTTAGGTCGTCG
CCGTCTGGCAACGGAAGCTCGAAGTTCTCTTCGGCTGAAACTCCGCGTCCATCTGGGTTT
TCCATAGATTCTATAATGGCACGTGGCGATCATCATACCAAAAGATCTAGTAAGAGAACT
AGATCGGATGAAGAATCATCGGGAGCAGAAAAACTAAGACGAATATCACAGAGTTCTTGT
TCTTCTTCTTCCTCTATTCCAATAAATCGTACAGAAAATCATGCAAGCGGGGTGGGCGAT
CGATGTTTTATAAGCGGATCAAGTCCCGAAAGTGTGTGCAATAATCTCGGCGATAATCTC
TCTATTCCGCCATCACTGAGAAGTATCAGTCCCGGCGAATGTGCAAGCAACGCTCCGATC
AAACATTTTCACAACACGCGACATAAACAAGATGAAAGTCATTCGCCTTCCAGTATCGCC
CGCTACAATCAAAGTAGCGATGAAAACAGTTTTAGATCCAAGATCAAAGAATGTCGACCT
AATAAATCTGTACTGGAATCTTCTAATTCACTCAATAATTATAGCGCTTCATTGGGTCTT
TCGAGCATACCGAGAGGAACAATTTCGCAGGTAACAAATTTCGATAACAGTGGAATGTTA
TTTTCAAACCTATTTACGGGAAGTGAGCAATCGTCCGCAGCAGCCGCACAGGTGCTGATG
AACATCGAAGCTGCTGCCAAACTGTACGGTGGCAACCAACTTCTCAGTGCCGCAGTGGCT
GGCCGATGGTGGGTATGA
| SMART |
Fork_head_dom (IPR001766) - T[313-403] 4.8E-60 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[314-414] 3.5E-45 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[314-409] 2.49E-39 |
| ProSiteProfiles |
Fork_head_dom (IPR001766) - T[315-409] 39.912 |
| Pfam |
Fork_head_dom (IPR001766) - T[315-399] 1.8E-37 |
| PRINTS |
Fork_head_dom (IPR001766) - T[315-328] 3.6E-22 - T[336-353] 3.6E-22 - T[359-376] 3.6E-22 |
| CDD |
Fork_head_dom (IPR001766) - T[315-392] 1.07322E-50 |
| ProSitePatterns |
TF_fork_head_CS_2 (IPR030456) - T[359-365] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FOXD4_HUMAN | 65.714 % | 204 | 6.27E-58 |
| FOXD3_HUMAN | 72.258 % | 206 | 1.63E-58 |
| FOXD1_HUMAN | 87.912 % | 189 | 2.99E-52 |
