- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S128.g04021.01.t
Possible name(s)
FOXD1; FOXD2; FOXD4
Gene model
Location
S128 [46,583 / 47,954]
Amino acid sequence
Length: 456
>Harore.CG.MTP2014.S128.g04021.01.p
MQALTPPAFNYLTEELKERTSPVNSDSGISESSSYQGIPNPTLSFESPLLVSPIRPNQYQ
LPVPPAHHKEECPGYPFPLAVSTPAPAHLSRGRRPSKTRYHPYGHRQIEDKQNQPVLQQF
LSMENESLQLRMQKQQQVLQFKSQEKSHTEKKIGKKQESGEVKPPYSYIALITMAIVQSP
GKKLTLGEICEFIMKKFPYYKERFPAWQNSIRHNLSLNDCFIKVPRQTGVPGKGNYWTID
PEAEDMFENGSFLRRRKRFRRTTTTIQEPIRHPASQIDSFVPTLSNIQSPASNYYHHHHY
AMYANQYALHTPIPTNPVPLYGTNSHPTYSNNMYVPQAMNACYNALPYYENDNNQALVYR
DISPGNVTQVQTPAPNSHLNHIAAAPAKPPQRKTCFSIESLLGKDDNSSNDCTRQIHQGS
KISMAAYQQQATHINGYNINYTQGDVPNYGVYHYAK
Nucleotide sequence
Length: 1,371
>Harore.CG.MTP2014.S128.g04021.01.t
ATGCAAGCACTAACGCCACCAGCGTTTAATTATTTGACTGAAGAATTGAAAGAGAGAACA
TCTCCTGTAAACTCCGATAGTGGAATCTCAGAATCTTCTTCCTACCAGGGAATACCCAAC
CCAACTCTCAGCTTCGAATCCCCACTACTAGTAAGCCCAATACGTCCAAATCAATACCAG
TTGCCTGTTCCACCGGCACATCACAAAGAAGAATGTCCTGGATACCCATTTCCGTTGGCT
GTTTCGACACCAGCCCCTGCACATCTCTCAAGGGGTAGAAGGCCTTCTAAGACGCGTTAT
CATCCGTACGGACATAGACAAATCGAGGACAAACAGAATCAACCAGTTTTGCAACAGTTT
CTTTCGATGGAAAATGAGAGCTTACAGCTGCGAATGCAAAAACAGCAACAGGTTCTTCAA
TTCAAAAGCCAGGAAAAGAGCCACACAGAAAAGAAGATAGGCAAGAAACAAGAGTCCGGT
GAAGTTAAACCACCATATTCGTACATTGCACTGATCACGATGGCGATCGTGCAGTCCCCA
GGCAAGAAGCTTACCTTGGGAGAAATATGCGAATTCATCATGAAGAAATTTCCGTACTAC
AAAGAACGTTTTCCAGCATGGCAAAACTCTATCCGTCACAATCTTTCTTTGAATGACTGT
TTCATCAAAGTACCAAGACAAACAGGAGTTCCTGGCAAGGGAAATTACTGGACCATTGAC
CCAGAAGCTGAAGATATGTTCGAGAATGGTTCGTTTTTGAGGCGAAGAAAACGCTTCCGA
CGCACTACCACCACAATTCAGGAACCCATTCGACATCCTGCTTCCCAAATCGACTCATTC
GTTCCAACGCTAAGCAACATCCAATCACCAGCAAGCAATTATTATCACCATCATCACTAC
GCAATGTATGCCAACCAGTATGCGCTTCATACTCCAATCCCGACTAATCCTGTTCCACTT
TATGGAACAAACAGTCATCCAACGTATTCTAACAACATGTATGTACCTCAAGCAATGAAC
GCATGCTACAATGCATTGCCTTATTACGAAAACGACAATAACCAAGCCCTAGTATATCGG
GACATCTCGCCGGGAAACGTGACACAAGTACAAACACCAGCCCCCAACTCACACTTGAAC
CATATTGCTGCAGCGCCAGCAAAACCGCCTCAGCGTAAGACATGCTTTTCCATTGAATCT
TTGCTCGGGAAGGATGACAATAGTAGCAACGATTGTACACGCCAAATCCACCAAGGATCC
AAAATATCCATGGCCGCTTACCAACAGCAAGCCACCCACATCAATGGTTACAACATAAAT
TATACTCAAGGAGATGTACCAAACTATGGAGTCTACCACTATGCAAAATAG
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[148-258] 2.1E-44 |
| SMART |
Fork_head_dom (IPR001766) - T[161-251] 1.0E-57 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[162-257] 2.86E-39 |
| ProSitePatterns |
TF_fork_head_CS_1 (IPR018122) - T[163-176] . |
| CDD |
Fork_head_dom (IPR001766) - T[163-240] 1.38552E-48 |
| PRINTS |
Fork_head_dom (IPR001766) - T[163-176] 1.4E-22 - T[184-201] 1.4E-22 - T[207-224] 1.4E-22 |
| ProSiteProfiles |
Fork_head_dom (IPR001766) - T[163-257] 39.024 |
| Pfam |
Fork_head_dom (IPR001766) - T[163-248] 1.4E-37 |
| ProSitePatterns |
TF_fork_head_CS_2 (IPR030456) - T[207-213] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FOXD4_HUMAN | 68.75 % | 178 | 6.65E-51 |
| FOXD1_HUMAN | 80 % | 170 | 7.52E-48 |
| FOXD2_HUMAN | 80 % | 170 | 1.68E-47 |
