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TRANSCRIPT CARD

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  1. EST 'AHC0AAA226YD18_RM1' > 
  2. Transcript 'Phfumi.CG.MTP2014.S3...' > 
  3. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S124.g13347.01.t

Possible name(s)

RPL18A

Gene model

Harore.CG.MTP2014.S124.g13347

Location

S124 [135,988 / 136,525]

Sequences

Amino acid sequence

Length: 178

>Harore.CG.MTP2014.S124.g13347.01.p
MKAKGELREYKVVGRKLPSDAVPNPPLYRMRLFAPDHIAAKSRFWYYISYYKKIKKNAGE
ILQCSKISEKSPGRVKNFGIWLRYDSRSGSHNMYREYRDVKVASAVTQCYRDMGARHRAR
PGSIQIMKVEEVSSSKCRRSNIKQFHNSKIKFPMPRRVLSKSRQHAPRFTTNKPNLFF

Nucleotide sequence

Length: 537

>Harore.CG.MTP2014.S124.g13347.01.t
ATGAAGGCAAAGGGAGAGTTACGTGAATACAAAGTTGTTGGCCGTAAATTGCCATCAGAT
GCGGTCCCAAACCCTCCGCTTTATCGCATGAGGTTATTTGCACCGGATCACATCGCTGCA
AAGAGTAGATTTTGGTACTATATCTCGTACTACAAAAAAATCAAGAAGAACGCTGGCGAA
ATTCTACAGTGTTCTAAGATATCTGAAAAATCTCCTGGCCGAGTCAAGAACTTCGGAATA
TGGCTGAGATACGATTCTCGTAGTGGAAGCCACAACATGTACAGAGAATATAGAGATGTG
AAAGTGGCAAGTGCAGTGACACAGTGTTACAGGGATATGGGTGCAAGACACAGAGCTCGT
CCTGGATCCATTCAAATTATGAAAGTCGAAGAAGTCTCGTCATCCAAATGCAGACGTTCT
AACATCAAGCAGTTTCACAATTCGAAAATCAAATTCCCTATGCCACGCCGGGTCCTAAGC
AAATCGAGACAACATGCTCCCAGATTCACTACAAACAAACCTAATCTGTTTTTTTAG

InterProScan

PANTHER
50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[1-178] 7.8E-90
PIRSF
Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[1-178] 1.1E-69
Pfam
Ribosomal_L18a//L18Ae/LX (IPR023573) - T[7-130] 3.0E-52
Hamap
50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[30-130] 36.627

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RL18A_HUMAN 71.91 % 275 5.14E-96