- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S124.g09772.01.t
Possible name(s)
TGFBRAP1; VPS39
Gene model
Location
S124 [131,404 / 134,152]
Amino acid sequence
Length: 915
>Harore.CG.MTP2014.S124.g09772.01.p
MSKVFELKFLVGRESIMGNKPRIMIESMATSGKNLFVGTTDGTICHFVLNEIPVNPGRPS
PSDGSDLKIALQNKTRVSTKKPVVQIETAPELKCLLINSDGCIYAYSMMDLSPSFEIFGK
LKNVSRFYVNSYPIHANPFAVEICVSYSKKRSVQLYQVQEDSIVPLKEVSLPEHPRSLAL
DGRHMCVGTLSGYLMVDMDSNTRQDLFPVVDTKLLVHRVAPSEFLLAAPNNLGVFVTSAG
ISQRPPIQWSEGTFQASYIYPYVVAMNDEFITIHSVLDQQQKQTLPFQGGIVLFESVPDK
LLVCTGKDIFILVLIPYETQITTLLNQSKVDEAMELAKAFRKCMSRDKYQGMMSRIYKRA
GFVHFRNLFFDAAEAMFTLGRIDAREIIVLYPGLLPDSSTVRNSSDLHSITNIHDMCHHD
NVKIQECEEFLASYLQLHPLPIKSDHSDSSTNPFAKEKLENNPEYRYDFFHASLKIFSKL
HSTKEILFLFQGEHEPISKTIPARSPLFFEFSKKFDVVSAILDEHGCFHARAMFTLLGDR
VDDAMQQWKALAVGIKKDLDFPGLSFIAEQLGKYYNDVSLLWKHVAWILELDQHVGVSIF
TKHLPLSEQSSKSESKEEGNLPKTDDIIAFLHHHPQSVTTYLEYLVYTCRVQKEKFHTHL
AVLYLDSVLNLLAESDKNEEEFAQAREKLQALLKKSSLYRVSLILSKVKDTDLHEECVIL
LGKLGEHEKSLDILVNKMRDQMAAEEYCLTQSTDMDSRKQLFRSLLSVYLSKVSISSSKS
SRSAMAVVDLLNKYAENYNAQEVLNVLPKTWSVTLLTRFLSRTLRIQRHGVCTDQLQHKL
ERCENNNVKKEHIQVLNKCVSINEDKICQVCNRLFQDTDCTLYPNGIAVHKHCGTNKFVC
PVTGKLFKTLPFPKH
Nucleotide sequence
Length: 2,748
>Harore.CG.MTP2014.S124.g09772.01.t
ATGTCAAAGGTATTTGAGCTGAAGTTTCTAGTGGGGAGAGAGAGCATCATGGGGAACAAA
CCACGGATTATGATCGAGTCCATGGCGACAAGCGGCAAAAATTTGTTTGTAGGTACGACT
GATGGAACAATTTGCCATTTTGTTCTCAATGAAATTCCGGTAAATCCTGGTCGTCCGAGT
CCAAGTGATGGTAGTGACCTAAAAATAGCTCTTCAGAACAAGACTCGTGTTTCAACAAAG
AAGCCTGTCGTTCAGATAGAAACAGCCCCTGAGCTCAAATGTCTATTGATTAATTCTGAC
GGCTGCATTTATGCATACAGCATGATGGATTTGTCTCCGTCTTTTGAAATATTTGGGAAA
CTAAAAAACGTTAGCAGGTTTTACGTCAACAGCTATCCAATTCATGCAAATCCTTTCGCA
GTTGAAATATGCGTATCGTATTCTAAAAAGAGAAGTGTCCAACTGTACCAGGTTCAAGAA
GACAGTATCGTGCCACTCAAAGAAGTATCATTGCCAGAACACCCTAGATCCCTCGCATTA
GACGGCCGTCACATGTGTGTAGGTACTTTGTCCGGGTATTTAATGGTCGACATGGATTCG
AACACTAGACAAGATCTCTTTCCTGTCGTAGACACTAAACTCTTGGTGCATAGAGTTGCT
CCATCTGAATTCCTTCTTGCTGCCCCGAATAATTTGGGAGTGTTTGTGACCTCAGCTGGT
ATCTCCCAGCGACCTCCCATTCAGTGGTCGGAGGGTACATTCCAAGCTTCTTACATCTAC
CCATATGTTGTTGCCATGAATGATGAGTTTATTACTATACACAGTGTGCTTGATCAACAG
CAGAAACAGACTTTACCTTTTCAGGGAGGTATTGTTCTTTTTGAAAGTGTTCCTGATAAG
TTACTTGTCTGTACAGGCAAAGATATATTCATTTTGGTTCTGATACCTTACGAAACCCAA
ATCACAACCCTTTTGAATCAATCGAAAGTAGACGAGGCGATGGAACTGGCAAAGGCATTT
AGAAAATGTATGTCGAGGGACAAATATCAAGGTATGATGTCAAGAATTTACAAAAGAGCG
GGTTTCGTGCATTTTAGAAACCTCTTTTTTGATGCTGCGGAGGCAATGTTTACTTTGGGT
CGTATCGATGCCAGGGAAATCATCGTGCTTTATCCTGGATTACTGCCTGATAGCTCTACC
GTGAGAAATTCATCAGATCTTCACAGTATAACCAACATTCACGATATGTGCCATCACGAC
AATGTGAAAATACAAGAATGTGAAGAGTTCCTAGCGTCCTATCTTCAATTGCACCCTCTG
CCAATTAAATCAGATCATTCTGATAGCTCAACGAATCCTTTTGCTAAGGAAAAGCTTGAA
AACAATCCCGAGTACAGATATGATTTCTTTCATGCCAGTCTAAAGATATTTTCCAAGCTG
CATTCTACAAAGGAGATTCTTTTTTTATTTCAAGGAGAGCACGAACCTATTTCCAAAACT
ATACCCGCAAGAAGTCCACTTTTCTTCGAATTTTCCAAGAAATTTGATGTCGTCTCGGCA
ATCTTAGATGAACACGGATGCTTTCACGCTCGAGCGATGTTTACTTTGCTAGGCGACCGT
GTCGATGATGCGATGCAACAGTGGAAAGCATTAGCTGTTGGAATAAAGAAAGATTTGGAC
TTTCCAGGACTTTCTTTCATTGCAGAGCAGCTTGGAAAATACTATAATGATGTTTCATTG
CTTTGGAAACACGTTGCTTGGATCTTGGAACTTGATCAACATGTTGGGGTATCGATTTTT
ACCAAACACTTGCCTTTGTCAGAGCAATCTAGCAAGTCTGAGTCAAAGGAAGAGGGCAAT
CTTCCGAAAACGGATGACATTATAGCTTTTCTTCATCATCATCCGCAATCAGTGACTACC
TACCTTGAATACTTAGTTTATACTTGCAGGGTACAAAAAGAAAAGTTCCACACTCATTTG
GCAGTTCTTTATCTTGACTCAGTTCTGAATCTCCTTGCCGAAAGTGATAAAAATGAAGAA
GAATTTGCTCAAGCCAGGGAGAAGCTGCAGGCTCTTTTAAAGAAGTCAAGTCTCTATAGA
GTATCTCTTATACTCAGCAAAGTAAAAGACACTGATCTCCATGAAGAATGCGTCATTCTG
CTTGGAAAACTGGGAGAGCATGAAAAATCCCTGGACATTCTTGTCAACAAAATGAGGGAT
CAAATGGCTGCAGAGGAATACTGTTTGACCCAAAGCACTGATATGGATAGTAGAAAGCAA
CTGTTCAGAAGCCTTCTATCAGTTTATCTAAGCAAGGTCAGCATAAGCTCTTCTAAGTCA
TCCAGGTCTGCGATGGCAGTCGTCGATTTATTAAACAAATATGCAGAAAACTACAACGCA
CAGGAAGTTCTGAACGTACTTCCGAAAACATGGTCTGTCACTCTTCTTACAAGATTTCTT
AGTCGTACTCTTAGAATACAGAGGCATGGTGTCTGTACCGACCAGCTCCAACACAAGCTT
GAAAGGTGCGAGAATAATAACGTAAAAAAAGAACATATTCAAGTTTTGAATAAATGTGTT
TCCATTAATGAGGATAAAATTTGTCAGGTGTGTAACAGACTGTTCCAAGATACTGATTGT
ACACTATACCCAAATGGCATTGCAGTACACAAACATTGCGGCACTAATAAATTTGTTTGT
CCTGTTACTGGTAAATTGTTCAAGACCTTGCCATTCCCCAAGCATTAG
| PANTHER |
Vam6/VPS39/TRAP1 (IPR032914) - T[13-896] 3.0E-162 |
| ProSiteProfiles |
CNH_dom (IPR001180) - T[22-300] 22.388 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[28-202] 2.64E-6 |
| Pfam |
CNH_dom (IPR001180) - T[70-286] 5.0E-19 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[612-774] 21.434 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[633-753] 2.4E-7 |
| Pfam |
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[788-894] 4.9E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS39_HUMAN | 27.616 % | 106 | 2.0E-23 |
| TGFA1_HUMAN | 35.73 % | 544 | 0 |