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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S124.g03656.02.t

Possible name(s)

LIN54; TESMIN

Gene model

Harore.CG.MTP2014.S124.g03656

Location

S124 [186,130 / 192,221]

Sequences

Amino acid sequence

Length: 700

>Harore.CG.MTP2014.S124.g03656.02.p
MENMSNQPPDLHDLLNIEEDPAVDPTKRSSTPVNHPQSDEILTPAKVLMVGEPVMVKTEP
QDIVDTVTSGVDTSGSSTDELPDGINSPSPGTAAAMESFIEHDDYTTGSPRLNEMSNFPV
NFTTSTISKIIVKPQTSIMASIRTSQPLSIAGKKFTVKQGMQPVQVVKREGGGGPIVTKY
IVKRNSTSAAAAQKSQVVLAKGNRNLVHSQVKASNLQSGSILLSPIKGGFKIPISPMKSP
IKVSVFPPKKNSVSEKQQIISIQSAVTQLPLKTQPTSINDSITSVNGIVAPGKNDTIQQK
HLAFSPRMDGGVKYQYVQIVSPGNSNQQTTLRSNQGQPITFTSMAQLNGSDITLSQPAGS
LTLVQPTIQKFQPQQHNVTLQRKAQTVKVTIPNQSNQMKPQQRLIMPATTSLHPIRPNLS
SLAPGSVIPAGNVGYAMVPAKYVEQLTKQLNSQASFVQDNPGQSLQKNSSSKPGGDGKLK
KPCNCTKSQCLKLYCECFANGQFCDECNCTNCYNNLKHEVDRSKAIRQCLERNPAAFRPK
IGRGKDDNRTHQKGCNCKRSGCLKNYCECYEARIPCTSKCKCIGCKNYEESNDRRSLMSL
ADAAEVRVQQQTAASTKLSNQIGDIRPNTRISSSGERLPYTFFTQEVIEATCTCLLAQAE
EAEKTNRPLAIAESMILEEFGRCLMQIIQSAGKAKVMHSQ

Nucleotide sequence

Length: 2,877

>Harore.CG.MTP2014.S124.g03656.02.t
ATGTGCATAAAACGCCTCATCAGATACGGGTACAAATCTTCGTCATCGCGGAAAGTTTTG
AACGATGTTGTTCTACGCTTGATAGTATGCCGCAGAAAATAGATTTTTTTTAGAAGTATG
GAAAACATGAGCAATCAACCTCCTGATCTTCATGATCTTTTAAACATCGAGGAAGATCCT
GCTGTTGACCCTACTAAAAGAAGTTCCACCCCAGTCAATCACCCACAGAGTGATGAAATC
TTGACTCCAGCAAAAGTCCTTATGGTTGGTGAACCTGTGATGGTGAAGACAGAACCACAA
GATATTGTTGACACAGTGACAAGTGGTGTTGATACTTCCGGTAGCAGTACTGATGAATTA
CCGGATGGCATTAATTCTCCGTCTCCTGGAACAGCCGCGGCTATGGAGAGCTTCATTGAA
CACGATGACTATACCACAGGTTCTCCAAGACTCAACGAAATGAGCAATTTTCCAGTCAAC
TTTACCACCAGCACGATAAGCAAAATCATTGTCAAACCCCAAACCAGCATAATGGCATCG
ATACGAACATCTCAGCCTTTAAGTATTGCCGGCAAGAAGTTCACTGTTAAGCAAGGCATG
CAACCTGTTCAGGTTGTGAAAAGAGAAGGTGGTGGGGGACCAATAGTGACAAAGTATATC
GTCAAACGCAACAGCACTTCAGCTGCAGCCGCTCAGAAGTCACAGGTCGTTTTAGCTAAG
GGAAATAGAAATTTAGTGCATTCACAAGTGAAAGCATCAAATTTACAATCGGGAAGTATA
TTGCTCTCACCGATCAAGGGAGGTTTCAAGATCCCAATATCACCAATGAAGAGCCCAATA
AAAGTTTCAGTCTTTCCGCCAAAGAAGAATAGCGTGAGCGAGAAGCAACAAATAATCAGC
ATTCAGTCGGCTGTGACTCAACTGCCTTTAAAGACACAGCCAACATCCATAAACGATTCT
ATCACAAGTGTCAATGGTATTGTCGCCCCTGGTAAAAATGACACTATTCAGCAAAAGCAT
TTGGCTTTTTCCCCCAGAATGGATGGTGGAGTAAAGTATCAGTATGTACAGATTGTCTCT
CCAGGTAATAGCAATCAACAGACAACATTGAGGTCGAATCAAGGTCAGCCAATCACATTC
ACTTCGATGGCCCAACTTAACGGCAGCGACATCACTCTAAGTCAGCCTGCCGGATCCCTC
ACACTCGTACAACCCACCATACAGAAGTTTCAACCGCAGCAGCATAACGTTACATTGCAG
CGTAAGGCACAGACTGTAAAAGTGACTATCCCGAATCAGTCGAATCAAATGAAACCTCAA
CAGCGTTTAATCATGCCAGCCACAACCAGCTTGCATCCTATCAGGCCAAACCTTTCGTCA
CTAGCACCTGGTTCAGTTATACCAGCAGGAAATGTCGGGTACGCAATGGTCCCAGCTAAA
TACGTCGAACAGCTCACAAAACAACTTAATAGTCAAGCATCATTTGTTCAAGACAATCCA
GGCCAATCATTACAGAAAAACAGTTCTTCAAAACCCGGAGGTGATGGTAAACTGAAGAAA
CCGTGTAATTGCACAAAGTCACAGTGCCTTAAGTTATATTGTGAATGTTTTGCGAACGGC
CAATTTTGTGATGAATGCAATTGTACCAATTGCTATAACAACCTAAAACATGAGGTAGAC
AGATCAAAAGCTATAAGGCAATGTTTGGAAAGAAATCCTGCAGCATTTAGACCTAAGATA
GGCAGAGGTAAGGATGACAATCGCACACACCAAAAAGGCTGTAACTGCAAGAGGTCTGGT
TGTTTGAAAAACTATTGTGAATGTTATGAGGCAAGAATACCGTGCACTTCGAAGTGTAAA
TGCATCGGTTGTAAAAACTACGAAGAGTCAAATGACAGACGATCTTTAATGAGCCTCGCA
GATGCTGCCGAAGTCAGAGTACAACAGCAGACAGCAGCCAGTACCAAGTTGTCAAATCAA
ATTGGTGATATCCGTCCTAATACGAGAATATCTTCCTCCGGTGAAAGACTGCCTTATACA
TTTTTTACTCAAGAAGTGATAGAAGCTACCTGTACATGTCTTCTAGCCCAGGCTGAGGAG
GCAGAGAAAACAAATCGACCATTGGCTATTGCCGAATCAATGATTTTAGAAGAATTTGGT
CGTTGCCTAATGCAGATCATCCAATCAGCAGGGAAAGCTAAAGTTATGCACAGTCAATAA
AGGAAGATTTTTCAGCAGAATCTCATGGTGTAAGAGTTCTTCCAAGAGCTAATACAAGGT
GCATCTGTCGGTTTACCAAGATAGACTACGATTGGATATGTAAAGGTCGTCGAAGGTGCC
TTCAGGAAGATAGAATAATATTTTACGATCCCTGGTTTTATTATTAAGAGTTTATAATTA
ATCTTCAATTCTATCTTTTCTTTATCATACGGGTTGGCAACGTTCTCCAAGTAGTATAAA
GTTGGTGGTCATGTTTTAGCATTTTTATGAATCGGCCTCAAAATGAATGTATAAAAAATA
CTTCCAAGATATTTCTGCCAGATTCAAATAACCTTGAATTCGAGATGTTCCGATGTCTTC
GATATATGATCCTTCAGTATCAACAAATATTTTTATATTTAATATTTCAAGGGTTTTAGA
CTTTTTAAATTTTGATTAATAGCAAAGTTCCAAATCTATTCAACTTTGGAAGAATGTTAC
GCGAGTGATTGATAATACGAGTACCTCAATTAGGCTGAATTGCTCGTGCCTACAGTTTTC
TTTCTTGATACAAGGTCAGTTTGTATCCGTCATGTGGCTTATTGCACTTGCTATCCTTTT
TAAGGTTGTCTACTGAAATTGTTTTGTTAGCGTGAACAATAAATAAATTATCTTGCG

InterProScan

PANTHER
Lin-54_fam (IPR028307) - T[48-86] 1.6E-118 - T[131-696] 1.6E-118
SMART
Tesmin/TSO1-like_CXC (IPR033467) - T[478-518] 2.6E-15 - T[550-591] 2.2E-19
ProSiteProfiles
CRC (IPR005172) - T[479-590] 34.253
Pfam
CRC (IPR005172) - T[480-515] 1.9E-11 - T[552-588] 3.6E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN54_HUMAN 44.674 % 372 1.8E-118
MTL5_HUMAN 52.582 % 201 5.99E-57