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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S124.g03656.01.t

Possible name(s)

LIN54; TESMIN

Location

S124 [186,980 / 191,541]

Sequences

Amino acid sequence

Length: 700

>Harore.CG.MTP2014.S124.g03656.01.p
MENMSNQPPDLHDLLNIEEDPAVDPTKRSSTPVNHPQSDEILTPAKVLMVGEPVMVKTEP
QDIVDTVTSGVDTSGSSTDELPDGINSPSPGTAAAMESFIEHDDYTTGSPRLNEMSNFPV
NFTTSTISKIIVKPQTSIMASIRTSQPLSIAGKKFTVKQGMQPVQVVKREGGGGPIVTKY
IVKRNSTSAAAAQKSQVVLAKGNRNLVHSQVKASNLQSGSILLSPIKGGFKIPISPMKSP
IKVSVFPPKKNSVSEKQQIISIQSAVTQLPLKTQPTSINDSITSVNGIVAPGKNDTIQQK
HLAFSPRMDGGVKYQYVQIVSPGNSNQQTTLRSNQGQPITFTSMAQLNGSDITLSQPAGS
LTLVQPTIQKFQPQQHNVTLQRKAQTVKVTIPNQSNQMKPQQRLIMPATTSLHPIRPNLS
SLAPGSVIPAGNVGYAMVPAKYVEQLTKQLNSQASFVQDNPGQSLQKNSSSKPGGDGKLK
KPCNCTKSQCLKLYCECFANGQFCDECNCTNCYNNLKHEVDRSKAIRQCLERNPAAFRPK
IGRGKDDNRTHQKGCNCKRSGCLKNYCECYEARIPCTSKCKCIGCKNYEESNDRRSLMSL
ADAAEVRVQQQTAASTKLSNQIGDIRPNTRISSSGERLPYTFFTQEVIEATCTCLLAQAE
EAEKTNRPLAIAESMILEEFGRCLMQIIQSAGKAKVMHSQ

Nucleotide sequence

Length: 2,103

>Harore.CG.MTP2014.S124.g03656.01.t
ATGGAAAACATGAGCAATCAACCTCCTGATCTTCATGATCTTTTAAACATCGAGGAAGAT
CCTGCTGTTGACCCTACTAAAAGAAGTTCCACCCCAGTCAATCACCCACAGAGTGATGAA
ATCTTGACTCCAGCAAAAGTCCTTATGGTTGGTGAACCTGTGATGGTGAAGACAGAACCA
CAAGATATTGTTGACACAGTGACAAGTGGTGTTGATACTTCCGGTAGCAGTACTGATGAA
TTACCGGATGGCATTAATTCTCCGTCTCCTGGAACAGCCGCGGCTATGGAGAGCTTCATT
GAACACGATGACTATACCACAGGTTCTCCAAGACTCAACGAAATGAGCAATTTTCCAGTC
AACTTTACCACCAGCACGATAAGCAAAATCATTGTCAAACCCCAAACCAGCATAATGGCA
TCGATACGAACATCTCAGCCTTTAAGTATTGCCGGCAAGAAGTTCACTGTTAAGCAAGGC
ATGCAACCTGTTCAGGTTGTGAAAAGAGAAGGTGGTGGGGGACCAATAGTGACAAAGTAT
ATCGTCAAACGCAACAGCACTTCAGCTGCAGCCGCTCAGAAGTCACAGGTCGTTTTAGCT
AAGGGAAATAGAAATTTAGTGCATTCACAAGTGAAAGCATCAAATTTACAATCGGGAAGT
ATATTGCTCTCACCGATCAAGGGAGGTTTCAAGATCCCAATATCACCAATGAAGAGCCCA
ATAAAAGTTTCAGTCTTTCCGCCAAAGAAGAATAGCGTGAGCGAGAAGCAACAAATAATC
AGCATTCAGTCGGCTGTGACTCAACTGCCTTTAAAGACACAGCCAACATCCATAAACGAT
TCTATCACAAGTGTCAATGGTATTGTCGCCCCTGGTAAAAATGACACTATTCAGCAAAAG
CATTTGGCTTTTTCCCCCAGAATGGATGGTGGAGTAAAGTATCAGTATGTACAGATTGTC
TCTCCAGGTAATAGCAATCAACAGACAACATTGAGGTCGAATCAAGGTCAGCCAATCACA
TTCACTTCGATGGCCCAACTTAACGGCAGCGACATCACTCTAAGTCAGCCTGCCGGATCC
CTCACACTCGTACAACCCACCATACAGAAGTTTCAACCGCAGCAGCATAACGTTACATTG
CAGCGTAAGGCACAGACTGTAAAAGTGACTATCCCGAATCAGTCGAATCAAATGAAACCT
CAACAGCGTTTAATCATGCCAGCCACAACCAGCTTGCATCCTATCAGGCCAAACCTTTCG
TCACTAGCACCTGGTTCAGTTATACCAGCAGGAAATGTCGGGTACGCAATGGTCCCAGCT
AAATACGTCGAACAGCTCACAAAACAACTTAATAGTCAAGCATCATTTGTTCAAGACAAT
CCAGGCCAATCATTACAGAAAAACAGTTCTTCAAAACCCGGAGGTGATGGTAAACTGAAG
AAACCGTGTAATTGCACAAAGTCACAGTGCCTTAAGTTATATTGTGAATGTTTTGCGAAC
GGCCAATTTTGTGATGAATGCAATTGTACCAATTGCTATAACAACCTAAAACATGAGGTA
GACAGATCAAAAGCTATAAGGCAATGTTTGGAAAGAAATCCTGCAGCATTTAGACCTAAG
ATAGGCAGAGGTAAGGATGACAATCGCACACACCAAAAAGGCTGTAACTGCAAGAGGTCT
GGTTGTTTGAAAAACTATTGTGAATGTTATGAGGCAAGAATACCGTGCACTTCGAAGTGT
AAATGCATCGGTTGTAAAAACTACGAAGAGTCAAATGACAGACGATCTTTAATGAGCCTC
GCAGATGCTGCCGAAGTCAGAGTACAACAGCAGACAGCAGCCAGTACCAAGTTGTCAAAT
CAAATTGGTGATATCCGTCCTAATACGAGAATATCTTCCTCCGGTGAAAGACTGCCTTAT
ACATTTTTTACTCAAGAAGTGATAGAAGCTACCTGTACATGTCTTCTAGCCCAGGCTGAG
GAGGCAGAGAAAACAAATCGACCATTGGCTATTGCCGAATCAATGATTTTAGAAGAATTT
GGTCGTTGCCTAATGCAGATCATCCAATCAGCAGGGAAAGCTAAAGTTATGCACAGTCAA
TAA

InterProScan

PANTHER
Lin-54_fam (IPR028307) - T[48-86] 1.6E-118 - T[131-696] 1.6E-118
SMART
Tesmin/TSO1-like_CXC (IPR033467) - T[478-518] 2.6E-15 - T[550-591] 2.2E-19
ProSiteProfiles
CRC (IPR005172) - T[479-590] 34.253
Pfam
CRC (IPR005172) - T[480-515] 1.9E-11 - T[552-588] 3.6E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN54_HUMAN 44.674 % 372 1.8E-118
MTL5_HUMAN 52.582 % 201 5.99E-57