- Transcript 'Moocci.CG.ELv1_2.S59...' >
- Transcript 'KH2012:KH.C1.637.v6....' >
- Transcript 'Boleac.CG.SB_v3.S359...' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S123.g05646.01.t
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
S123 [48,330 / 53,822]
Amino acid sequence
Length: 925
>Harore.CG.MTP2014.S123.g05646.01.p
MLKNKCRAPGTWSWTGAMFEINMPMQTSTELDIFPDLTMRSTPTCHEMAENRNLNKCRRI
PLRRDSYMGFSVATSSSVGTDSDEVFYAAGSPRGNNTGAVIIFKKRVDSSGKTILDYLPL
ESLSGEGIASSFGFSVAFTDLNADGLDDLIVGAPQYYSYTNEGKHGGAIYIYLNQPDRGF
RQVGPQRFYGPLDSFFGYSVEAIGDIDQDGFNDFAVGAPYENGNGTVHIFRGSSSGVVKE
SQTILGSEFTHVRSTRIGPIIGFGTSLSGNVDSDSNKYPDLLIGTLSNHVVLIRSRPIIS
VVGTLEVRPKGIDLEQKNCESDGKSYTCFTVRVCFRYKARHDEYTEKLSLEYKLTLDSIR
QKDKKTSRVHYKSPKGLSTVQEKIIMPRTGEKICPGRNVDIYFSKNVEDKLSKIGIELEF
NLVEKKIKREKINHEVFNLINDTILDADLDSLKKSIIAINNDCGTDGCQSNLQVNASMPP
EIIVGGDEGVKLTLQVSNAGEEAHQAYIGITMPGNINFESFESPSEDIQCYDIVKGESVF
IRCSLGNPYKGGTSDEIVINLGVSSLSADDKIIEIQVTAHTTSENPEMLPIFLQSMIIIE
MDLSLTASAYPEQVRYKQKEIVGESAMKEITDIGPLVVYTFNIKNEGTQPASGVQLNVRL
PYEINNGKWLLYLVSADVNSGGSFAAGSCASEYINVLQLKASIQPSGLRSKRSVSGFDNI
IFLGYSKTIQYPRPQEVKKLALASSSGGSFIPSLTLDCSKETANCIDLICDLDDIKLRST
VSITLQAYVWDATFLEEYKDLDLVKIATFSNITTSQENVRFKGDRTSEKIYTTVDHEYFK
GEGGATFPWWFILIGVIILLIVYILIIVLLIKYILNPKNMMVMRSERSRRKIKMISRKAT
CDCSRMHFGEKKLFRIFIPVFAVRC
Nucleotide sequence
Length: 3,033
>Harore.CG.MTP2014.S123.g05646.01.t
ATGCTTAAGAATAAATGCAGAGCACCAGGAACTTGGTCATGGACTGGGGCAATGTTCGAA
ATAAATATGCCAATGCAAACTTCCACAGAACTTGATATATTTCCTGACCTCACGATGCGG
TCGACTCCCACTTGTCATGAAATGGCTGAGAATCGAAATTTGAACAAATGTCGCAGAATA
CCATTACGACGTGATAGCTATATGGGATTTTCTGTCGCGACCAGTTCATCTGTAGGGACA
GACTCTGACGAAGTTTTCTATGCTGCAGGCTCACCACGTGGTAACAACACCGGGGCTGTG
ATTATATTCAAGAAAAGAGTTGATTCATCTGGAAAAACTATTCTTGATTATCTTCCTCTG
GAATCACTTAGTGGAGAAGGAATTGCATCCAGTTTTGGATTCTCAGTTGCATTCACCGAT
CTCAATGCGGATGGTTTGGATGATCTGATTGTCGGCGCTCCGCAATATTACAGTTACACA
AACGAGGGAAAGCATGGTGGAGCAATTTATATTTATCTTAATCAGCCCGATAGAGGTTTT
CGGCAAGTCGGTCCACAGAGATTTTATGGCCCTCTGGATTCGTTCTTTGGCTATTCTGTA
GAAGCCATTGGTGACATTGACCAGGATGGATTCAACGATTTTGCTGTTGGAGCACCATAT
GAAAACGGAAATGGGACTGTCCATATATTTCGTGGATCAAGTTCAGGTGTAGTGAAAGAA
TCACAAACTATACTTGGCAGTGAATTTACTCATGTCAGGAGTACCAGGATCGGACCTATC
ATTGGATTCGGAACCTCGCTGTCTGGAAATGTTGATTCGGACAGTAACAAGTATCCTGAT
CTTTTGATTGGAACACTCTCAAATCATGTAGTATTGATAAGATCACGACCCATCATCAGT
GTCGTAGGAACTTTAGAGGTCCGGCCAAAAGGAATTGACTTAGAACAAAAGAATTGTGAA
AGTGATGGAAAAAGTTATACATGTTTTACTGTCAGAGTTTGTTTCAGGTATAAAGCTCGT
CACGACGAATATACTGAAAAATTATCTCTGGAGTATAAACTGACGTTAGATAGCATTCGC
CAGAAAGATAAAAAAACATCTCGAGTTCACTATAAGTCACCAAAAGGACTATCAACTGTT
CAAGAGAAGATTATAATGCCTAGAACAGGTGAAAAGATTTGTCCTGGAAGGAATGTTGAT
ATTTATTTCAGTAAAAATGTTGAAGACAAGCTGAGTAAAATTGGAATTGAACTTGAATTC
AATTTGGTTGAGAAAAAAATTAAACGTGAAAAAATCAACCATGAAGTTTTCAACTTGATA
AATGATACTATCTTGGACGCTGACCTTGACAGTCTGAAAAAATCTATCATCGCTATTAAC
AATGACTGTGGCACTGACGGATGTCAGAGCAACTTGCAGGTTAATGCCAGTATGCCCCCA
GAAATCATTGTTGGCGGCGACGAAGGAGTAAAGTTAACTCTCCAAGTATCCAATGCTGGA
GAGGAAGCTCATCAAGCTTACATAGGCATCACCATGCCTGGCAATATTAATTTTGAATCG
TTTGAATCACCTAGTGAAGATATACAGTGTTATGATATTGTGAAAGGAGAGTCTGTATTT
ATCCGTTGTAGTTTGGGGAATCCATATAAGGGTGGTACGAGTGATGAAATCGTTATCAAC
CTAGGAGTTTCCAGCCTTTCTGCAGATGACAAAATAATTGAGATACAAGTCACTGCTCAT
ACGACGAGTGAGAATCCAGAAATGCTTCCCATATTCCTGCAATCTATGATAATCATAGAA
ATGGATCTCTCGCTGACTGCCTCAGCCTATCCAGAACAGGTTCGATATAAGCAGAAAGAA
ATTGTTGGTGAATCCGCAATGAAGGAAATCACAGACATTGGGCCACTTGTCGTTTATACA
TTTAATATCAAGAACGAAGGTACTCAACCTGCGTCTGGAGTGCAACTGAATGTCAGGCTT
CCATACGAAATAAATAATGGAAAATGGCTGCTCTACTTGGTGTCAGCAGATGTGAATAGC
GGGGGTTCTTTCGCAGCTGGAAGCTGCGCTAGCGAGTACATTAATGTGTTGCAACTAAAG
GCTTCCATTCAACCTAGTGGTCTGAGAAGCAAGCGATCAGTAAGTGGTTTTGATAATATA
ATTTTTCTGGGATATTCTAAAACAATACAATATCCACGGCCACAAGAAGTCAAAAAGCTT
GCCCTTGCCAGTTCTAGTGGCGGCTCTTTCATACCGAGCTTGACTCTTGATTGCTCTAAA
GAAACGGCTAACTGCATAGACCTTATATGTGATCTGGATGATATTAAATTACGTTCTACA
GTGTCCATCACCCTACAGGCTTACGTGTGGGATGCAACATTCTTGGAAGAATACAAAGAC
TTAGACCTCGTGAAAATAGCTACTTTTTCAAATATTACTACGAGTCAGGAAAATGTTCGC
TTCAAGGGTGATAGAACCAGTGAAAAGATTTACACAACAGTAGATCATGAATACTTTAAA
GGTGAAGGAGGAGCAACTTTTCCCTGGTGGTTTATTCTTATTGGAGTCATTATACTTCTC
ATTGTCTACATATTGATCATCGTTCTACTCATCAAATATATCCTCAACCCGAAGAATATG
ATGGTGATGAGGTCAGAGAGATCAAGGAGAAAGATAAAAATGATATCGAGGAAAGCAACT
TGTGATTGTTCGAGAATGCACTTCGGAGAAAAAAAATTGTTTCGAATATTCATCCCAGTT
TTTGCAGTACGTTGCTAGCTAATGCAGCGTATGGCAATGCTTCTTCGTTCTACTGCATTG
TAGAACTGCGCAGATAATGCCTTGCAGTCTGAAATTTCTCTTAATTTTTTACACAATAAT
TATTCTATCCATTTTTATTGAATATTTTAAATTACCCTGCTTTTGAAATATTATAAGTAC
CTCCCTTGTAAGCATCTGAAAAATTTTGCTTTTTTTCATCTCATGAAACGAAATCACTGA
CTTCGGTCGGGAACTTTGAATCATATTGCGTAA
| Gene3D |
Integrin_alpha_N (IPR028994) - T[6-299] 1.9E-72 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[55-112] 6.642 - T[118-181] 13.831 - T[182-239] 12.184 - T[250-310] 7.421 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[64-116] 1.3 - T[128-187] 1.7E-11 - T[192-245] 1.2E-13 - T[259-305] 150.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[65-77] 4.3E-43 - T[125-145] 4.3E-43 - T[195-219] 4.3E-43 - T[263-284] 4.3E-43 - T[289-308] 4.3E-43 - T[409-422] 4.3E-43 |
| Pfam |
FG-GAP (IPR013517) - T[132-172] 4.8E-10 - T[196-230] 1.1E-6 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[295-770] 9.6E-88 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[297-464] 3.09E-25 - T[467-593] 1.15E-21 - T[599-852] 4.71E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 30.425 % | 368 | 1.14E-110 |
| ITA6_HUMAN | 31.294 % | 377 | 1.55E-114 |
| ITA3_HUMAN | 28.59 % | 280 | 7.25E-80 |