- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S123.g02445.01.t
Possible name(s)
PARN; PNLDC1
Gene model
Location
S123 [42,879 / 46,476]
Amino acid sequence
Length: 715
>Harore.CG.MTP2014.S123.g02445.01.p
MEVTRNNFRETMPKIEKAISKANFIAIDGEFSGVTNGNYILTNYDTPEERYHKIRQNMSE
FLLMQYGIVFFHWDAPKEQYIAEAFNFYIFPVCSSGSGMKDRIFSCQSSSIDFLTAQGFD
FNKVFHSGIPYLKPGEEATVRTTLTEKHLQRVQNYKSPRKSLETNNSSAELCSPAGSPTL
ITDPKTQAFVDGVKKKVEEFLKSSQEKDSLKLEPCNSYLRKILYETLPTMFTEPLTLESE
INERTKQRYIVVTRAGSEKTIQDRKEKARAKDDSFLQDAIGFSKIIQMLSQSQKMIVGHN
IFLDLIFTVQQFVCEPLQTLEEFKSVLRCLFPKLLDTKLMGSMLPFKDLVTSTALGEMHS
RLSNLPFTLPKIVPPEKYRPSESNLDMDINLHEAAYDAYITGVSFLSMLNFLSSFRKLGN
NHTMANPGSEIISPYLNKIFLMKSPDIPYLNLTGSDLTPSRSHVFHVQFPPTWKTSDIRM
LFGSVGNAINISWINDTQCFVGLYNKSQAKLVKNSLLTAGSNQSNEYTIRSYEEYQRDVA
GEIYSAPLYRPRPPPVYSKNKVWRPNHNNSNATTSTETATKLLTPSSSTSFSACLAATKI
LSSTGQTEMLKAGQKRSGDESCNSSQPGESELDESKTADEPETKRQKSQDGIETDPAKDP
VVEKSPANTDIPTLLADHAVERDVPMQDAMEGSSGSNHCDANHSTSAFEVPTNWD
Nucleotide sequence
Length: 2,572
>Harore.CG.MTP2014.S123.g02445.01.t
ACAATTTTTTTTTGCATTTTGCAAGTTATGTTCCACAGAATCACAGATTTGAACTAATTC
CTTTGAAATAACTAGCTAGCTTCGAAAGTACAGGGTCCAGATTAACATTTCCTTTGCTAG
TTCTTTGCTAGTGTATCGTACCCGTTCTTGATAAATGGAAGTGACTCGCAATAACTTCCG
GGAGACCATGCCAAAGATTGAGAAGGCGATTTCAAAAGCTAACTTCATCGCTATCGATGG
GGAATTCAGCGGAGTCACTAATGGAAATTACATTTTGACAAACTACGACACTCCGGAAGA
ACGATATCATAAAATACGTCAAAACATGTCTGAATTTCTGCTTATGCAATATGGTATAGT
GTTTTTTCATTGGGATGCACCGAAGGAGCAGTATATTGCTGAAGCCTTTAATTTCTACAT
ATTTCCAGTTTGCTCTTCGGGTTCTGGGATGAAAGATCGAATATTTTCTTGCCAAAGTTC
CAGCATCGATTTTCTTACTGCTCAAGGCTTTGATTTCAACAAAGTTTTTCACAGTGGCAT
TCCTTACCTTAAACCAGGTGAAGAGGCTACCGTGAGAACGACACTCACTGAAAAACATTT
GCAGCGAGTACAAAATTATAAATCGCCAAGAAAAAGTCTCGAAACAAACAACAGCTCTGC
GGAGCTTTGCAGTCCGGCTGGGAGCCCGACGCTTATAACAGATCCAAAAACTCAAGCGTT
TGTTGACGGAGTTAAAAAGAAAGTGGAAGAATTTTTAAAATCTTCCCAAGAGAAAGATAG
CTTGAAGCTAGAACCTTGTAACAGCTATTTGAGGAAGATATTGTATGAAACTTTACCAAC
TATGTTTACTGAACCTCTCACTCTGGAATCTGAAATAAATGAGCGTACAAAGCAAAGATA
TATTGTAGTAACTCGAGCCGGGAGTGAAAAAACGATTCAGGATAGGAAGGAAAAAGCGAG
AGCAAAAGACGATTCCTTTCTACAAGATGCAATTGGATTTTCAAAAATTATCCAGATGCT
CAGTCAGAGTCAAAAGATGATTGTTGGACACAATATCTTCCTTGATCTGATTTTCACAGT
GCAGCAGTTTGTTTGTGAACCTCTTCAAACCCTTGAAGAATTTAAATCTGTCCTTAGATG
CTTGTTTCCCAAGCTCCTTGACACCAAGTTGATGGGTAGTATGCTACCTTTCAAGGATCT
CGTTACTTCTACTGCATTAGGAGAAATGCATTCAAGGTTATCCAACCTACCTTTTACTTT
GCCAAAAATAGTTCCGCCTGAAAAATACCGCCCATCGGAATCAAACCTGGACATGGATAT
TAATTTGCATGAAGCAGCATATGACGCATACATCACAGGTGTTTCTTTTCTGTCGATGTT
AAACTTCTTATCATCCTTTCGGAAGCTAGGGAACAATCACACGATGGCCAATCCTGGTTC
AGAAATCATTTCTCCCTATCTCAATAAAATCTTTTTGATGAAAAGTCCAGACATACCATA
CCTAAATCTGACAGGCAGTGACTTGACTCCATCTCGAAGCCATGTTTTCCATGTTCAATT
TCCCCCTACTTGGAAGACTTCTGATATAAGAATGCTATTCGGTTCAGTCGGGAATGCGAT
AAACATATCATGGATTAATGATACTCAGTGCTTTGTGGGACTTTATAATAAATCTCAGGC
AAAGTTGGTCAAAAACTCACTATTGACTGCTGGGAGCAATCAATCGAATGAATATACAAT
TAGATCTTACGAAGAATACCAAAGAGACGTAGCGGGTGAAATATATTCTGCTCCGCTATA
TCGACCGCGCCCACCTCCAGTTTACTCAAAAAACAAGGTTTGGAGGCCCAACCACAATAA
CAGTAATGCCACAACATCCACTGAAACAGCTACAAAGCTTTTGACCCCATCAAGTTCTAC
ATCTTTCTCTGCATGCTTGGCAGCTACTAAGATCTTGTCCTCTACTGGACAAACAGAAAT
GTTGAAAGCTGGACAGAAGCGAAGTGGTGACGAATCTTGCAATTCTTCACAACCGGGGGA
GTCGGAGCTCGACGAAAGTAAAACGGCCGATGAACCAGAAACAAAACGTCAAAAATCCCA
GGATGGCATCGAAACTGACCCCGCTAAAGACCCCGTGGTTGAAAAGTCGCCAGCCAACAC
AGATATCCCAACCCTCTTAGCTGATCATGCTGTTGAGAGGGACGTGCCCATGCAGGATGC
CATGGAAGGAAGTTCTGGAAGCAACCATTGTGACGCAAATCATTCCACCAGTGCATTTGA
GGTGCCAACTAATTGGGACTGAGATTTTTTGTTAATTTGCACAGATGGGCGGATCAACTA
CAAGAATAAGGTTTGTATGAACCAGGGATTTATTTTTTGTAAGTTCTGATCAAGATCAAG
TTGATATTAACTAGTGGAATTAGGTTAGATTATTTCCGAAGTTTGTCATGAAAAAATAGG
TATGATACGTTATAAAACGTTTTCAGGTTATTCAACGTGAAATTAAAATGGTTCAAACAA
CCTCTTCCTAGAAATAAATTCCTAATGCAACATTGTTAGGATATGGAATGAA
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[1-133] 3.54E-56 - T[279-413] 3.54E-56 |
| Gene3D |
RNaseH_sf (IPR036397) - T[2-144] 3.6E-110 - T[257-410] 3.6E-110 |
| Pfam |
RNase_CAF1 (IPR006941) - T[3-405] 2.9E-79 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[167-256] 3.6E-110 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[182-260] 2.22E-15 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[187-256] 11.184 |
| Pfam |
R3H_dom (IPR001374) - T[189-254] 9.9E-6 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[448-516] 4.36E-9 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[449-543] 1.5E-25 |
| Pfam |
PolyA-riboNase_RNA_binding (IPR014789) - T[454-537] 9.5E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PARN_HUMAN | 43.704 % | 436 | 2.05E-144 |
