- Transcript 'Moocci.CG.ELv1_2.S25...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S122.g14596.02.t
Possible name(s)
CDC40; WDR25; WDR5
Gene model
Location
S122 [71,127 / 77,138]
Amino acid sequence
Length: 631
>Harore.CG.MTP2014.S122.g14596.02.p
MDGTGMQALCSAYAESDENEDSPDETVHPEDALLHLKPACSQIKQIQVVSLAPDVVTKYD
TAGVKVVDHITSKEVLFNPTFEQLHAPEQGPQNPFKTRQQLAEKNTLAGFVQEAHIDKFQ
FENQRRTFHSYGYAVDPSVDNTGTEGTGSKLVIGECGEELIKSNNDEKSKTVFEKVKPRE
PDKRKREKCDKPEDIEGFLGPWGGFVDDVKVSKPSEDEKREIDEFLSKRQKRGKKWEDRT
IEEKTTLHVKDPNDYQGRSYLHIPQDVGINLKSDTPPDKCYLPKTLIHTWSGHTKAVSAI
RLFPKSGHLLLSTSMDCKVKIWEVYNKRRLIRTYNGHAKAVRDACFTNSGKDFITAAYDR
FLKLWDTETGQCKAKFTNKKIPYCVKFNPDEDKQNLFIAGLSDKKIVAWDIRSNEVVQEY
DRHLGAVNTVTFVDNNKRFVSTSDDKSLRVWEWDIPVDFKYIADPGMHSMPSVTLSPNGK
WLGCQSLDNQIMIFDVHGRFRLKQKKKFKGHMVAGYACQMDFSPDQSYVVSGDGDGKVCV
WDWKTTRLFSKFKAHDKVCIGCLWHPHETSKIITCGWDGLIKLFVSEVPFCKEIEFTPLW
QIQRKDICLSFYSFLASLIHILIYPHIFKAF
Nucleotide sequence
Length: 2,304
>Harore.CG.MTP2014.S122.g14596.02.t
GGTAGTTATTGGAATCATCGGTAATAGGTTAAAGGTCACACATTTCCATTCGTGATTTGA
TTTCGTTCGTACGCTTACCGCGATTTTATATTTTATAAAAATGGATGGAACTGGTATGCA
AGCTTTGTGCTCTGCTTATGCTGAATCTGACGAAAACGAAGATTCCCCGGACGAGACTGT
CCATCCTGAAGATGCATTGCTGCACTTGAAACCAGCGTGTTCTCAAATCAAACAGATTCA
AGTAGTATCGCTGGCCCCGGATGTCGTAACGAAGTATGATACTGCTGGCGTCAAAGTTGT
GGATCACATTACATCAAAAGAAGTACTTTTCAACCCGACATTTGAACAGCTTCATGCGCC
TGAACAGGGACCACAAAACCCTTTTAAGACACGACAGCAACTCGCTGAAAAGAATACGCT
CGCCGGTTTTGTACAAGAAGCTCACATCGATAAATTTCAATTTGAAAATCAGCGACGAAC
TTTTCACAGCTATGGTTATGCCGTTGATCCTTCTGTCGATAACACAGGAACAGAAGGTAC
AGGATCAAAACTGGTTATAGGAGAATGTGGGGAAGAGCTTATCAAAAGCAACAATGATGA
AAAGAGTAAAACAGTTTTTGAGAAAGTAAAGCCAAGAGAACCTGATAAACGAAAACGAGA
AAAATGTGATAAACCGGAAGACATTGAAGGTTTCCTCGGCCCGTGGGGTGGTTTCGTCGA
TGATGTGAAAGTATCCAAGCCATCTGAGGATGAAAAAAGAGAGATAGATGAATTCCTTTC
TAAGCGTCAGAAGAGAGGGAAGAAATGGGAGGATCGAACGATTGAAGAGAAGACGACACT
TCATGTCAAAGATCCAAATGATTACCAGGGAAGATCATACTTACATATCCCACAGGATGT
TGGCATCAATCTAAAATCCGATACCCCACCAGATAAATGCTATCTTCCTAAAACACTCAT
ACATACGTGGAGCGGCCATACTAAAGCAGTGTCTGCGATTCGTCTTTTCCCAAAATCTGG
ACATTTGTTGCTCTCAACATCTATGGACTGTAAAGTCAAGATATGGGAGGTGTACAACAA
ACGCAGATTGATTCGGACATACAACGGGCATGCAAAAGCTGTCAGGGATGCTTGCTTTAC
TAACAGTGGAAAAGACTTTATTACTGCAGCCTACGATAGATTTCTTAAACTGTGGGACAC
TGAAACAGGACAATGTAAAGCAAAGTTCACAAATAAAAAAATCCCTTATTGCGTCAAGTT
CAATCCCGATGAAGACAAACAAAATCTGTTTATTGCTGGGCTTTCAGACAAAAAGATTGT
TGCCTGGGACATAAGGTCAAATGAGGTTGTTCAGGAATATGATCGTCATTTGGGAGCAGT
AAACACGGTTACCTTCGTTGACAATAACAAACGTTTCGTTTCAACTTCAGACGACAAGAG
TCTCCGTGTTTGGGAATGGGATATTCCTGTGGATTTCAAGTACATTGCGGATCCTGGCAT
GCACTCCATGCCATCTGTGACTCTGTCTCCCAATGGCAAATGGCTTGGGTGCCAATCGTT
GGACAATCAGATTATGATATTCGATGTTCATGGTCGATTCAGGTTAAAACAGAAGAAAAA
ATTCAAAGGCCATATGGTGGCTGGATATGCCTGTCAAATGGATTTCTCTCCTGACCAGTC
TTACGTAGTCTCCGGTGATGGAGATGGAAAGGTCTGCGTGTGGGACTGGAAAACAACTCG
CTTGTTCAGTAAATTCAAAGCTCACGATAAAGTTTGTATCGGCTGCTTATGGCACCCTCA
TGAAACATCAAAAATCATAACCTGTGGCTGGGATGGCCTAATCAAGCTATTTGTGTCAGA
GGTACCATTTTGTAAGGAAATTGAATTCACACCTCTTTGGCAAATACAGAGGAAGGATAT
TTGCCTATCATTTTATTCGTTTTTAGCAAGCTTGATACATATATTGATATACCCTCATAT
TTTCAAGGCATTTTAAGATGTTAAGTTAATCTCTGTAGATAGTAACTTGAATGCATTACA
TCAAAATAAAGTGATAAAAGCATTATCCAGTACAATCGGAAAATTATATACCGTATTTCA
CCAAGTATAATGTGCAGCCATAAATAACCCCCCTCAGTGCCTATAATGTTTCTGTATTAT
CGATCACCATCATTGCAAAGGTGGCAGTTAAATTAACATTCTAGAGTCTAGACTCAACAA
ACAAGTGCTGGAAATCATATCATGTAATTATGTTTTCCATAGATAATAAATACCATGATT
TTTATGCTTGAAATTTTCGAAAAC
| PANTHER |
PRPF17 (IPR032847) - T[8-584] 1.6E-259 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[269-585] 7.3E-93 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[281-584] 2.5E-69 |
| SMART |
WD40_repeat (IPR001680) - T[283-323] 1.6E-7 - T[327-366] 3.4E-6 - T[369-410] 0.035 - T[413-452] 1.7E-6 - T[458-495] 41.0 - T[501-542] 1.4E-5 - T[545-585] 0.0034 |
| Pfam |
WD40_repeat (IPR001680) - T[286-322] 3.0E-5 - T[329-366] 0.0016 - T[417-451] 0.0088 - T[505-542] 3.0E-5 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[290-584] 36.015 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[290-332] 11.511 - T[334-375] 13.015 - T[420-452] 12.146 - T[520-551] 10.308 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[310-324] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.825 % | 133 | 1.95E-34 |
| WDR25_HUMAN | 26.837 % | 149 | 1.77E-38 |
| PRP17_HUMAN | 64.209 % | 754 | 0 |