- Transcript 'KH2012:KH.L9.26.v1.A...' >
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- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S122.g14596.01.t
Possible name(s)
CDC40; WDR25; WDR5
Gene model
Location
S122 [71,209 / 76,854]
Amino acid sequence
Length: 560
>Harore.CG.MTP2014.S122.g14596.01.p
ILYFIKMDGTGMQALCSAYAESDENEDSPDETVHPEDALLHLKPACSQIKQIQVVSLAPD
VVTKGPQNPFKTRQQLAEKNTLAGFVQEAHIDKFQFENQRRTFHSYGYAVDPSVDNTGTE
GTGSKLVIGECGEELIKSNNDEKSKTVFEKVKPREPDKRKREKCDKPEDIEGFLGPWGGF
VDDVKVSKPSEDEKREIDEFLSKRQKRGKKWEDRTIEEKTTLHVKDPNDYQGRSYLHIPQ
DVGINLKSDTPPDKCYLPKTLIHTWSGHTKAVSAIRLFPKSGHLLLSTSMDCKVKIWEVY
NKRRLIRTYNGHAKAVRDACFTNSGKDFITAAYDRFLKLWDTETGQCKAKFTNKKIPYCV
KFNPDEDKQNLFIAGLSDKKIVAWDIRSNEVVQEYDRHLGAVNTVTFVDNNKRFVSTSDD
KSLRVWEWDIPVDFKYIADPGMHSMPSVTLSPNGKWLGCQSLDNQIMIFDVHGRFRLKQK
KKFKGHMVAGYACQMDFSPDQSYVVSGDGDGKVCVWDWKTTRLFSKFKAHDKVCIGCLWH
PHETSKIITCGWDGLIKLWR
Nucleotide sequence
Length: 1,977
>Harore.CG.MTP2014.S122.g14596.01.t
ATTTTATATTTTATAAAAATGGATGGAACTGGTATGCAAGCTTTGTGCTCTGCTTATGCT
GAATCTGACGAAAACGAAGATTCCCCGGACGAGACTGTCCATCCTGAAGATGCATTGCTG
CACTTGAAACCAGCGTGTTCTCAAATCAAACAGATTCAAGTAGTATCGCTGGCCCCGGAT
GTCGTAACGAAGGGACCACAAAACCCTTTTAAGACACGACAGCAACTCGCTGAAAAGAAT
ACGCTCGCCGGTTTTGTACAAGAAGCTCACATCGATAAATTTCAATTTGAAAATCAGCGA
CGAACTTTTCACAGCTATGGTTATGCCGTTGATCCTTCTGTCGATAACACAGGAACAGAA
GGTACAGGATCAAAACTGGTTATAGGAGAATGTGGGGAAGAGCTTATCAAAAGCAACAAT
GATGAAAAGAGTAAAACAGTTTTTGAGAAAGTAAAGCCAAGAGAACCTGATAAACGAAAA
CGAGAAAAATGTGATAAACCGGAAGACATTGAAGGTTTCCTCGGCCCGTGGGGTGGTTTC
GTCGATGATGTGAAAGTATCCAAGCCATCTGAGGATGAAAAAAGAGAGATAGATGAATTC
CTTTCTAAGCGTCAGAAGAGAGGGAAGAAATGGGAGGATCGAACGATTGAAGAGAAGACG
ACACTTCATGTCAAAGATCCAAATGATTACCAGGGAAGATCATACTTACATATCCCACAG
GATGTTGGCATCAATCTAAAATCCGATACCCCACCAGATAAATGCTATCTTCCTAAAACA
CTCATACATACGTGGAGCGGCCATACTAAAGCAGTGTCTGCGATTCGTCTTTTCCCAAAA
TCTGGACATTTGTTGCTCTCAACATCTATGGACTGTAAAGTCAAGATATGGGAGGTGTAC
AACAAACGCAGATTGATTCGGACATACAACGGGCATGCAAAAGCTGTCAGGGATGCTTGC
TTTACTAACAGTGGAAAAGACTTTATTACTGCAGCCTACGATAGATTTCTTAAACTGTGG
GACACTGAAACAGGACAATGTAAAGCAAAGTTCACAAATAAAAAAATCCCTTATTGCGTC
AAGTTCAATCCCGATGAAGACAAACAAAATCTGTTTATTGCTGGGCTTTCAGACAAAAAG
ATTGTTGCCTGGGACATAAGGTCAAATGAGGTTGTTCAGGAATATGATCGTCATTTGGGA
GCAGTAAACACGGTTACCTTCGTTGACAATAACAAACGTTTCGTTTCAACTTCAGACGAC
AAGAGTCTCCGTGTTTGGGAATGGGATATTCCTGTGGATTTCAAGTACATTGCGGATCCT
GGCATGCACTCCATGCCATCTGTGACTCTGTCTCCCAATGGCAAATGGCTTGGGTGCCAA
TCGTTGGACAATCAGATTATGATATTCGATGTTCATGGTCGATTCAGGTTAAAACAGAAG
AAAAAATTCAAAGGCCATATGGTGGCTGGATATGCCTGTCAAATGGATTTCTCTCCTGAC
CAGTCTTACGTAGTCTCCGGTGATGGAGATGGAAAGGTCTGCGTGTGGGACTGGAAAACA
ACTCGCTTGTTCAGTAAATTCAAAGCTCACGATAAAGTTTGTATCGGCTGCTTATGGCAC
CCTCATGAAACATCAAAAATCATAACCTGTGGCTGGGATGGCCTAATCAAGCTGTGGCGC
TGAAGCAGAGTGGAAAACGTCATTAACACAAGTCTGTTGCAATAACAGATTTGTGTCAGA
GGTACCATTTTGTAAGGAAATTGAATTCACACCTCTTTGGCAAATACAGAGGAAGGATAT
TTGCCTATCATTTTATTCGTTTTTAGCAAGCTTGATACATGTCAAATGATACATGTGTAT
ACAGTACATTGAGTGCAGAGGCATTAATGAACTGAATATATGAACTCAGGTGTGTAGATA
TTGATATACCCTCATATTTTCAAGGCATTTTAAGATGTTAAGTTAATCTCTGTAGAT
| PANTHER |
PRPF17 (IPR032847) - T[63-559] 1.4E-247 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[244-560] 7.3E-93 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[256-559] 1.33E-70 |
| SMART |
WD40_repeat (IPR001680) - T[258-298] 1.6E-7 - T[302-341] 3.4E-6 - T[344-385] 0.035 - T[388-427] 1.7E-6 - T[433-470] 41.0 - T[476-517] 1.4E-5 - T[520-560] 2.3E-5 |
| Pfam |
WD40_repeat (IPR001680) - T[261-297] 2.6E-5 - T[304-341] 0.0014 - T[392-426] 0.0075 - T[480-517] 2.6E-5 - T[525-559] 0.017 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[265-307] 11.511 - T[309-350] 13.015 - T[395-427] 12.146 - T[495-526] 10.308 - T[527-560] 8.871 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[265-560] 40.998 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[285-299] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 30.164 % | 135 | 1.96E-35 |
| WDR25_HUMAN | 27.157 % | 153 | 3.67E-40 |
| PRP17_HUMAN | 64.259 % | 731 | 0 |