Aniseed - Transcript Card

Region 'REG00000118' >
Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1220.g00629.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Gene model

Harore.CG.MTP2014.S1220.g00629

Location

S1220 [1,204 / 7,121]

Sequences

Amino acid sequence

Length: 542

>Harore.CG.MTP2014.S1220.g00629.01.p
MCLFGIKKRVIVNFYLLHGFSQIKRLQELEGRQKKSKANGDTVKEEINQSIERCICELES
RKQMLIDEVDAFVAMETRSLQVEQENLEVELATMSSFCENAEQRNKIFGEVSESIPANTR
RQQQSETLQLTRQSKEHLRNNRLVTNNIEDKIGRTIKFRKEGERSLLCSISDFGDVSFHV
PSRVSMTFGSDLSMNEAEIQRAMLEDYSPRYGRRADRIEEQPPTFISPSPGSTDTSSPAP
TSTQTMNNDSPRNQTESAIPANRLRGNRNRRGRGRLISQTPSYFTIGNSRPANNSTVSRS
DLSPHVTGIRTTLWQYRSKGPVKCCFGMKGSDNGCLNWPRGIAATSDGNIIVADSSNHRV
QIFDSSGTSVHSFGSYGSGDGEFDCLAGVCVTTQGWIITSDRYNHRIQIFDSQGRFIRII
RCPECRALHILPRNGVTGLPNNLIILKFLDIPIRKEETKNRTCQDCSKSDIESVKCNHCE
KLLCTDCLTKHSKTLNQELSRAITQVQRFLPKVSEFITELEGRQKKSKANGDTVKEEINQ
VS

Nucleotide sequence

Length: 1,629

>Harore.CG.MTP2014.S1220.g00629.01.t
ATGTGTCTTTTTGGCATCAAAAAGAGAGTCATCGTCAATTTTTATCTATTACACGGCTTT
TCACAAATTAAACGCTTACAAGAGCTCGAAGGACGACAGAAGAAATCAAAAGCGAACGGA
GATACAGTGAAAGAAGAAATAAACCAGTCAATTGAACGTTGCATCTGCGAACTAGAGTCA
AGAAAACAAATGTTGATTGACGAAGTTGATGCGTTTGTTGCTATGGAGACAAGATCTCTT
CAAGTCGAGCAGGAGAATCTTGAAGTAGAACTTGCAACCATGAGTAGTTTTTGTGAAAAT
GCAGAACAAAGAAATAAAATATTTGGTGAAGTCTCAGAGTCAATTCCTGCGAACACTAGG
AGGCAGCAACAGAGTGAAACATTGCAATTAACACGACAGAGCAAAGAACATTTACGGAAC
AACAGACTCGTCACAAATAATATTGAAGATAAAATTGGAAGAACAATTAAGTTTCGGAAA
GAAGGTGAAAGGTCACTCCTTTGTTCGATTTCTGATTTCGGGGATGTGTCGTTCCACGTT
CCGTCTCGTGTCTCGATGACGTTCGGAAGCGATCTGTCGATGAACGAAGCAGAGATTCAA
CGAGCGATGTTGGAGGATTACAGTCCGCGATATGGAAGAAGAGCCGATCGCATAGAAGAA
CAACCACCGACATTCATATCTCCATCCCCCGGTTCAACTGATACCAGCTCTCCGGCGCCC
ACTAGCACACAAACTATGAATAATGATTCTCCGAGGAATCAAACTGAATCAGCAATCCCT
GCAAATCGTCTGCGAGGAAATCGCAATCGTAGAGGTAGGGGTCGATTGATTTCACAAACT
CCGTCTTATTTCACAATCGGGAACAGCAGACCAGCGAACAACAGCACAGTGTCACGAAGC
GACCTTTCACCTCATGTTACTGGGATTCGGACAACACTCTGGCAATATAGAAGTAAAGGT
CCAGTGAAATGTTGTTTTGGAATGAAAGGAAGTGACAACGGATGCTTGAATTGGCCGAGA
GGTATCGCAGCGACATCCGATGGAAATATTATAGTGGCAGACAGCAGCAATCACAGAGTT
CAAATCTTTGACTCGTCCGGTACATCCGTCCACTCCTTCGGCAGTTACGGCAGTGGTGAC
GGGGAATTCGACTGCCTGGCAGGTGTTTGTGTGACCACGCAAGGCTGGATCATAACCTCG
GATCGTTACAACCACAGGATCCAGATATTTGACAGCCAGGGACGATTTATTCGAATCATT
CGTTGCCCTGAATGTCGAGCTCTTCATATTCTTCCAAGAAACGGAGTTACAGGATTGCCA
AATAATTTAATTATTCTTAAATTCCTCGATATTCCGATTCGAAAGGAAGAGACAAAGAAT
CGTACTTGCCAGGATTGTTCCAAATCTGATATTGAAAGTGTGAAATGCAATCATTGTGAA
AAACTACTTTGTACCGATTGTCTCACCAAACATTCGAAGACTTTGAATCAAGAATTATCT
CGAGCTATTACACAGGTTCAACGATTTCTTCCGAAAGTTTCTGAATTTATTACAGAGCTC
GAAGGACGACAGAAGAAATCAAAAGCGAACGGAGATACAGTGAAAGAAGAAATAAACCAG
GTATCTTGA

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[314-436] 4.5E-34
ProSiteProfiles	NHL_repeat_subgr (IPR013017) - T[323-366] 16.9 - T[370-413] 14.926
Pfam	NHL_repeat (IPR001258) - T[336-363] 5.5E-10 - T[383-410] 1.9E-5
ProSiteProfiles	Znf_B-box (IPR000315) - T[458-502] 8.56

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LIN41_HUMAN	44.565 %	84	5.95E-17