- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S10.g00049.01.t
Possible name(s)
COL1A1; COL1A2; COL3A1
Gene model
Location
S10 [617,477 / 620,488]
Amino acid sequence
Length: 373
>Harore.CG.MTP2014.S10.g00049.01.p
MKYFMRVCNVYKTPSLYGLTGIGFYMDFNTNESNRENIRHSQTSISIAAEDDNKKTKRLL
CRPVSFACFWILLFLALFVTTVGVGILFYVNLSEEILELKSDFIALQQQSDSAMGGRAVA
LVGKAFSEATIQEKLKEEDILRTDDDFYDYSTPRSRRDATSSSMPLRQHKRGERHKFIVR
DIRGPAGRDGRDGLNGLPGPRGVPGIPGESIRGPVGTPGPQGEIGPPGPAFKLNFAHVHG
DGSSGVSATKNGVLNHWMKADWSSNQNYRLFTHNGTLQVHDAGTYFIYSQLLCFNSGSTN
SVSHEVKINGDTFLRCKRSSKLSTCYTSGVKKLSANDNVYIVTTYPGMQVDMLSDVSFFG
VVMWAKDRSKEEL
Nucleotide sequence
Length: 2,148
>Harore.CG.MTP2014.S10.g00049.01.t
ATGAAATATTTCATGAGAGTATGTAATGTGTACAAGACACCTTCATTGTATGGATTGACT
GGTATTGGTTTTTATATGGATTTCAACACTAATGAATCCAATAGGGAAAACATAAGACAT
TCTCAGACCAGCATATCAATCGCAGCTGAAGATGATAACAAGAAAACGAAGCGACTATTG
TGTCGTCCTGTCTCTTTTGCATGTTTTTGGATTCTCTTATTTCTCGCTCTCTTTGTGACA
ACTGTCGGAGTCGGGATCTTGTTTTATGTCAACCTGTCTGAAGAAATTCTGGAATTAAAA
TCAGATTTCATTGCTTTGCAACAACAGTCAGATAGCGCAATGGGAGGAAGAGCTGTGGCT
TTGGTGGGCAAGGCATTTAGCGAAGCAACAATTCAAGAAAAACTAAAGGAGGAAGATATC
CTGAGAACCGATGACGATTTCTATGACTACTCCACTCCAAGATCACGCCGGGACGCTACA
AGCTCTAGCATGCCACTAAGACAGCACAAACGAGGAGAGCGACATAAATTCATTGTTCGT
GACATACGTGGACCAGCTGGGAGAGATGGAAGGGATGGTCTTAACGGTTTGCCAGGACCC
AGAGGTGTGCCTGGAATTCCTGGCGAATCAATTCGTGGACCAGTCGGAACACCTGGTCCT
CAAGGAGAAATTGGTCCACCTGGGCCTGCTTTCAAATTAAACTTTGCACATGTACATGGT
GATGGCTCATCTGGTGTTAGTGCAACAAAAAATGGTGTCCTTAACCACTGGATGAAAGCT
GACTGGAGTTCGAATCAAAATTACCGACTTTTCACGCATAATGGTACCTTGCAGGTCCAT
GATGCTGGAACATACTTCATATACAGTCAGTTGTTGTGCTTTAACTCTGGTTCAACAAAT
TCTGTGAGCCACGAGGTTAAGATTAATGGCGACACATTTTTGCGCTGCAAAAGAAGTTCG
AAATTAAGCACATGCTACACCTCTGGCGTAAAGAAATTGTCGGCTAATGACAATGTTTAC
ATCGTGACTACTTACCCTGGCATGCAAGTTGACATGCTGAGCGATGTTTCCTTTTTTGGA
GTTGTCATGTGGGCCAAAGACAGAAGCAAGGAAGAACTGTGAAAATAGTTGGACAGCTGC
AATAGGATGCACAACATTTATGGAACATCAGACTATCCAGATATTCAATCATACACAGAA
GTAGTATTCAATCATAAACATAATTTTAGATGGTTACCTTATTGATTTATCATATCACCA
CGATCTACAATCAACATCATATAATACAATTATCTATTAGCTTCCGCAGCTGTACGATTT
GGACTCAAGTGCAATACAAAGCATCCTCCCGTCAGTGTATAGAAAAATACTTATCATGCT
TTCAAAGCGTCTTTCCATGACTAGTGCCACAAAACATTCTCTTTTCCGTGAAATCTGTGT
TGTAAAAGTCGAGTATTGAAATTTTTTATTACTGTTTTGTATCAATCATGATATTTTCCA
GTGCCAAATCTTATTTTTTGCAAAAGAATTGAAAGTAACTATAAATTCAGTCATGTATCC
CGTTTTAGGAATTTGTATTCGCATTGAAAACATATTTTAGTTCTTTTTGTTATGAATTAT
CTCTTGACATCCCTGACAAAAGAAGTAAAATGAACTGAATTTTACCTTTTTATTCAATCA
TGTGATATATATTAACAAACATTGAAGTGAAAATTCCAGTGCTGCTATTTTTCAGGCTGT
TTGATGGTCAAAATCAATTCCAGTAAGTTTTATACACATTTTATACAGGCTTTTATTTGT
TTACTACTCTATCACTGTACTAAATGTTTGGTATATTATGACATATCTTTTCATAAGCAT
TGTTTATCATGTTGCTTGCTTTTTTATTGTCATTTCATTCTATATAGCTTCTTATTATTG
GATAATCAAAGTTTCTGAGTTTCGTTCCTATAGGCTAGCCTAGTATTTGTACATTTTTCG
CTTGTTAATAGGAAACAATTAGGCAGTTATTGATTCTCAATGTGCAGTCAATTATTGTTA
GTTCACCGTGAGATTGACATTTTAATTTTCGTCTGGAAATGCAGGATTTCAATACAATTT
TTCTTTGCATGAACCATGGTACTGTTTTGACCGATCAAGATATTGCTG
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[230-363] 1.9E-25 |
| SMART |
TNF_dom (IPR006052) - T[234-364] 0.0038 |
| ProSiteProfiles |
TNF_dom (IPR006052) - T[236-363] 9.531 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[254-364] 1.76E-20 |
| Pfam |
TNF_dom (IPR006052) - T[256-363] 5.9E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|