- Transcript 'Phmamm.CG.MTP2014.S6...' >
- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'KH2012:KH.C3.383.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S105.g14641.01.t
Possible name(s)
EED; LRWD1; TAF5
Gene model
Location
S105 [8,612 / 13,198]
Amino acid sequence
Length: 658
>Harore.CG.MTP2014.S105.g14641.01.p
MNLKEQLNITISPRKRKLESEKNGEAEHKADTRVLTEEKILKLTGCNDLNEVEELCLENC
NLTHEDLEPKLFNRMPSLSALDVSNNEIETIPLNLKMPELEILNISSNKLTSVEWLKCFP
NLLELDMRNNPYLPVVDYYKAVFMLKRIELIDNKGVKMKFDIQQVYTDKLRSKMEVIWKL
QYVRKLQQLMDMQERNIVVKEFANFCKKSVVYGPNSLREFRHWRIEDLAKEIAAGSDDGA
EEKGKHQSSRNSLESDEKSIASKIIGASVTCSPHRFLQCHGNDSENDQDFTQQVWCCRFH
PNMNNIVATCGGETVCITDVITGTVKARFQQTNEEFYSLDWTTFKINSTCSPSILACGGC
LGFVHLIHYEQFCCYGYFKAHDKPIQTLSFVPNHSTYLLSAGNDFSIFLWDIGIPSFPDY
RYSRRKLAVFQNLNYNPLKLMMMQDKYLLCASEGGLFCWKLSLKLTDIKTKSPPHLFPAN
SKITFPCMEEEEFVDGLAVIDNDVIATKCAQVGVIFLWRFSEVESKLSKSAKSVTAPLAM
ELKWSNTPQCYMNITVCKKTKTLLAGDDKGQIWMYSLDKNIPNKGGKSQASLMPMLPEKT
MNPSALLPWPVCFRSNGTPLKDLDTGTVYNDICSSFCMDYVVAVADNNLVCIFKSARQ
Nucleotide sequence
Length: 3,687
>Harore.CG.MTP2014.S105.g14641.01.t
CAGCAAAATATACCATCCGCGAGATATAGGTCTTATCATAGACTTTGTATTTCGCTGTCG
CTTTCGTGTCGTGTAACCAGGGATTGTATACGTGACTTAGCAGGCAGCGAGCATGATCTC
CCGAGAATTATCAACACTTTCTATTCCGTGTTAACGCACTGACAAAATGCCAAATTAGTT
TGTATGTGTATGGCTACCTTTGTTCACTTTTAAATGATCAATATGGAACTTTTAATTTTG
TTGTTCTTTAATACACCCTTTAACATTTTTAGAACAATATATAAATATACTTATAACAAG
ATTATTAGAATAAGATGTCATATGTTTTTTCAAGTGCTTTTATTCAAGATAGGCTTAGTT
GAAGCTTATGCAAGTAACACCAACACTTATTAACAACTATTATTATCATAATATTCAGTG
AAATGTATCAAAGATCTAGTAAAAGTATAAAAAGATCAAAAACCATTTAAAGCATTGCTG
AAAGGCTTAAAAGCACTGGTAAATATTATTGTCGGGCTGATTTGAAGATACAAACGAGAT
TATTGTCAGCTACAGCAACCACATAATCCATGCAAAAACTTGAACAAATGTCATTGTACA
CGGTACCGGTATCGAGATCTTTCAAAGGTGTACCATTCGATCTGAAGCACACTGGCCAAG
GAAGCAATGCAGAAGGATTCATGGTTTTTTCAGGTAGCATTGGCATCAAACTAGCTTGGG
ATTTTCCACCCTTGTTAGGAATATTTTTGTCCAATGAATACATCCATATCTGTCCTTTAT
CATCTCCAGCTAATAAGGTTTTTGTCTTTTTGCAAACAGTGATATTCATGTAGCACTGAG
GGGTGTTTGACCATTTCAATTCCATAGCAAGTGGTGCGGTAACACTTTTAGCTGACTTGG
ACAGCTTGCTCTCGACTTCACTGAATCTCCACAAAAAGATTACACCGACTTGGGCACATT
TTGTGGCTATAACATCATTGTCAATTACAGCAAGCCCGTCTACAAATTCTTCTTCCTCCA
TGCAAGGAAATGTTATTTTGGAATTTGCAGGAAAAAGATGGGGAGGTGATTTAGTTTTGA
TATCAGTTAGTTTAAGTGAAAGCTTCCAGCAGAACAAACCTCCTTCTGAAGCACACAATA
AATACTTATCCTGCATCATCATAAGTTTCAGTGGATTGTAATTCAAATTCTGAAAGACCG
CCAGTTTCCTGCGAGAATACCGATAGTCCGGGAAGGATGGGATGCCAATGTCCCATAGAA
AAATCGAAAAATCATTGCCGGCTGACAGCAGATACGTAGAATGGTTTGGAACAAAGCTCA
GGGTTTGAATAGGTTTGTCGTGGGCTTTGAAATAACCATAGCAACAGAACTGTTCATAAT
GAATGAGATGAACAAAACCAAGGCATCCACCGCAAGCAAGAATACTGGGTGAGCACGTAC
TATTTATTTTAAAGGTTGTCCAGTCTAAACTATAGAATTCTTCATTTGTTTGCTGAAACC
TTGCTTTCACTGTACCAGTGATCACATCAGTGATACATACTGTTTCACCACCACAGGTTG
CCACAATGTTATTCATGTTTGGATGAAATCTGCAGCACCAAACTTGCTGCGTGAAATCTT
GATCATTTTCACTATCATTCCCATGGCATTGTAAAAAGCGATGGGGTGAACATGTTACGG
AGGCTCCAATGATCTTTGACGCGATGGACTTTTCATCAGATTCAAGGGAATTTCTTGAGC
TTTGGTGTTTTCCTTTTTCTTCTGCCCCATCATCACTTCCAGCAGCAATTTCCTTAGCAA
GGTCTTCAATCCTCCAATGTCGGAATTCCCTCAGAGAGTTTGGGCCGTAGACAACTGATT
TTTTACAGAAATTAGCAAATTCTTTCACAACAATGTTTCTTTCTTGCATGTCCATGAGTT
GTTGTAGTTTTCTCACATATTGTAGTTTCCATATCACTTCCATCTTTGATCTAAGCTTAT
CTGTATATACTTGCTGAATATCAAATTTCATTTTCACCCCTTTGTTGTCAATGAGCTCGA
TCCTTTTGAGCATGAATACTGCTTTGTAGTAATCCACTACAGGTAAATAAGGATTGTTTC
GCATGTCTAGTTCGAGTAGGTTTGGGAAACATTTCAGCCACTCAACAGATGTCAACTTGT
TAGAAGAGATATTTAGTATCTCTAATTCAGGCATTTTCAAATTCAATGGTATAGTCTCTA
TTTCGTTATTTGAAACATCTAAAGCGGACAAAGAAGGCATTCTATTGAACAGTTTGGGCT
CTAAATCTTCATGTGTGAGGTTGCAGTTTTCTAGACACAGTTCTTCGACTTCATTTAGGT
CATTACACCCGGTAAGCTTGAGAATTTTTTCTTCAGTCAGTACACGAGTATCGGCCTTGT
GTTCAGCTTCTCCATTCTTCTCTGATTCGAGCTTCCGTTTTCTAGGTGAAATAGTAATGT
TGAGCTGCTCCTTCAAATTCATACTGCTTTATTCCAGCTTGAATATTCGTAACAGCACTT
GATACTTTCTTATCAATACTTACCACATGCTATGTTAACATTAGACTTTCCTGTGCATGT
ATTAGATGGCTACCTTCCTGAGCTTAACGTTATTTTTACTCAGTTAATTCCTTTTCATCA
GATACGTGTGGTTAGCTTCACCATGTCGGTATGGTCTGTTTTGCTAGTGATATCCTCGTT
ACTAATTCTATTTGACTGTTCTCACGCGAAATATAATGATATCAGATGCCGGTGTACGTG
TAAAGAGCTGATAAGCCGTTCGATTCCTCGCAAGCAATATGTCACGGAATCAACGCAAGA
TTACTGCAATTGTGTGGGATCTGTTCTTCCTCAAATTAATCAAAGCGTTTTGGCAGAAGA
AACTGGTGCGGTGTTAAAACAGTATTGCTTAGGATGTCACTGTGTTTATGAAGTCAGAAG
TACAAAGACTATGGAGGTGGTCGTTGTTCTCTATCTGATTCTAATTGGAATCTTACTACT
TTACATGGGTGTTGTTTCTACGTCTTATGCAGTACAAAGATATAAAAAAATGTCTCAGCA
CAATACTGAGCATCAACAACTAGTCGATGAATATCCTTCGACCTCAAGAGAAGTTCAACG
CAGTAAAAGAACAAAGATTACATCGGGAACCATGGTTATGCAAAGGCTTAACTCTGCTCA
AGATGAATGGAAGAAGCAGGTCGAGAATCAACGGGACAAAGTATTTGGGAGCAGAAATAT
TCTGCAGTGATGTTTATTCTGTAAAATTTATCACACTTTAACAACCATTCTGTATGCTCT
CGTTCTTGTTTTTCTGCAGCCCTGCGGCTTTGGTTCTATGCAGGTCATTGTGTGATCGGA
AGTGGATTTGTATCAATGATTGTAGTTCATAATGAACAAGGTCTTTGGCATTGGTCACTG
ATGTAATATGAAGCTGCGCTCACAGATGTTGAATCGATTTTTAAATATCTCTATGATTTT
AATGCCAACTTGTATAAGTTCATGTGCAATCTGTACTATTGCTAAATGTGAATCGTTCTA
TTTGTAAAGTGCTAATATATATACACAATTCACAACTCGCTCCATAAATAGTCTAAACTT
ACTTGATAAGAAACTTATCATGATACCTGGAGGTAACTACAGAGAGAACCCCTGAGACTG
ACTCATCGAACCCCTGTTAAGAACCAC
| Gene3D |
LRR_dom_sf (IPR032675) - T[19-182] 7.8E-19 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[77-98] 7.242 - T[99-120] 7.435 |
| Pfam |
Leu-rich_rpt_4 (IPR025875) - T[98-132] 1.3E-6 |
| SMART |
WD40_repeat (IPR001680) - T[270-319] 0.75 - T[322-368] 140.0 - T[371-411] 1.7E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[290-581] 7.63E-26 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[378-412] 12.514 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[378-420] 10.733 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[398-412] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRWD1_HUMAN | 29.116 % | 291 | 2.73E-89 |