- Clone 'AHC0AAA172YG05' >
- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g45038.01.t
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
chrUn [285,938,596 / 285,942,618]
Amino acid sequence
Length: 259
>Boschl.CG.Botznik2013.chrUn.g45038.01.p
MARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLAIFLRNRLHYALTYDE
VKKILMQRLVKVDGRVRTDVTYPAGFMDVISIEKTGENFRLIYDAKGRYAIHRITAEEAK
YKLCKVKKVGTAAKGVPYLVTHDARTIRYPHPDIKTNDTCVVDIATGKISKYTKFEIGLL
CMITGGHNIGRIGTIMNREKHPGSFDIVHVKDSTGHTFATRLSNVFVIGQVNKPMISLPR
GKGIRLTIAEERDKRLAMK
Nucleotide sequence
Length: 780
>Boschl.CG.Botznik2013.chrUn.g45038.01.t
GATGGCTCGCGGACCTAAGAAGCATCTCAAGCGACTTAATGCGCCAAAGCATTGGATGTT
GGACAAGTTGACTGGTGTTTTGGCGCCACGTCCGTCCACCGGCCCGCACAAGCTCCGTGA
ATGTTTGCCGCTGGCTATTTTCCTCCGAAATCGCCTCCACTACGCTTTGACGTATGACGA
GGTCAAAAAGATTTTGATGCAGCGTCTTGTGAAGGTCGACGGCCGAGTCAGGACTGACGT
TACTTATCCCGCTGGGTTTATGGACGTCATCTCAATCGAGAAGACGGGTGAAAACTTCCG
TCTCATCTATGACGCTAAGGGCAGGTACGCTATCCACAGGATTACCGCTGAAGAAGCCAA
GTACAAGCTCTGCAAAGTGAAGAAGGTGGGCACGGCGGCAAAGGGTGTCCCGTATCTGGT
GACGCACGACGCCAGAACCATCCGCTATCCCCACCCGGACATCAAGACCAACGACACTTG
CGTCGTCGACATCGCCACTGGCAAGATATCCAAGTACACCAAGTTTGAGATCGGTCTTCT
GTGCATGATCACCGGAGGTCACAACATCGGACGTATCGGAACTATTATGAATCGCGAAAA
GCACCCTGGGTCTTTCGACATCGTCCACGTCAAGGACTCCACCGGTCACACCTTCGCCAC
TAGGCTGAGCAACGTGTTTGTTATCGGACAGGTGAACAAGCCCATGATTTCTCTCCCGAG
GGGCAAGGGCATCCGGCTGACGATCGCGGAAGAGCGAGACAAGCGTCTTGCTATGAAATA
| PANTHER |
Ribosomal_S4e (IPR000876) - T[1-259] 2.1E-146 |
| PIRSF |
Ribosomal_S4e (IPR000876) - T[1-241] 2.9E-98 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[3-39] 4.0E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[7-238] 35.956 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[8-22] . |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[42-105] 9.565 |
| SMART |
S4_RNA-bd (IPR002942) - T[42-106] 1.0E-4 |
| Pfam |
S4_RNA-bd (IPR002942) - T[43-90] 5.4E-7 |
| CDD |
S4_RNA-bd (IPR002942) - T[44-112] 8.48196E-5 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[87-181] 8.0E-31 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[95-169] 1.8E-36 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[122-171] 2.1E-24 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[175-245] 4.6E-36 |
| Pfam |
40S_S4_C (IPR032277) - T[212-258] 2.0E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 78.764 % | 434 | 4.11E-156 |
| RS4Y1_HUMAN | 76.834 % | 428 | 8.09E-154 |
| RS4Y2_HUMAN | 73.745 % | 412 | 2.06E-147 |