- Transcript 'KH2012:KH.S115.11.v2...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g35582.01.t
Possible name(s)
ARNT; ARNT2; ARNTL
Gene model
Location
chrUn [232,601,654 / 232,603,394]
Amino acid sequence
Length: 579
>Boschl.CG.Botznik2013.chrUn.g35582.01.p
MDSKASNQGMDDMSQADKERFARENHSEIERRRRNKMTAYITELSDMVPSCSALARKPDK
LTILRMAVTHMKQLRGAMPSGGADSAYKPAFLTDQELKHLVLESADGFLFVASCETGHVV
YVSDTVTSVLGQAHTDWLGHNIYDLIHPQDIPKVQEQLSLNDQGGGRMLDLKTGTVKKEG
QQSSVRVSNGSRRAFICRMRCGKVPSNNPSRYQRMRNTLGPNSKGEEPHAVMHITGHIKP
WPPTGFNGSEGQPDGLEDIASQNPNATDYCLVAIARLQITSRPTFGDLNPTADSNEFVSR
HNFDHVYTFVDSRVTSILGYQPQDLLGKTPDEFYHPDDAEQAKESFKQVMLLRGQVFSMM
YRFRSQNGEYLLMRTSSFAFQNPYNNEVEYIVCTNSLVKPGQSQQAGRPAEDQRQDSKTL
QXXXXXXXXXXXXXXXXXQSYGAKTIESPGIQSPTGNTLNYSGQSNTAPQYNAPSVPVMP
QTAWGHNSMQNETNTQYPQTLMDRYPGGVPNQPSHPAMYNVSNGPYQTSPMGGYGVEGCV
PDAYHTQESMLPPVLDQGGNNYAQEDFPDMFSNYSQHQQ
Nucleotide sequence
Length: 1,740
>Boschl.CG.Botznik2013.chrUn.g35582.01.t
CATGGATAGCAAAGCAAGCAATCAGGGAATGGACGACATGTCGCAGGCGGACAAAGAACG
ATTTGCGAGAGAGAACCACTCGGAAATAGAGAGGCGACGTCGAAATAAAATGACTGCGTA
TATTACCGAACTATCTGACATGGTCCCGAGCTGCAGCGCCCTGGCTCGAAAACCAGATAA
ATTGACAATCCTTCGGATGGCGGTCACGCACATGAAACAATTACGCGGAGCAATGCCAAG
TGGAGGTGCTGACAGTGCGTACAAGCCTGCATTTCTCACGGATCAAGAGTTGAAGCATTT
AGTCCTGGAATCGGCCGACGGGTTCTTGTTTGTTGCGTCTTGCGAGACGGGCCACGTGGT
CTACGTCTCTGACACAGTCACGTCAGTTCTCGGTCAGGCGCACACCGACTGGCTGGGTCA
CAATATTTACGACCTGATCCACCCGCAGGACATTCCAAAAGTACAGGAGCAATTGAGTCT
CAACGATCAAGGAGGTGGCCGCATGCTGGATCTTAAAACCGGAACTGTAAAGAAAGAAGG
GCAGCAAAGCTCTGTGAGAGTGTCTAACGGTTCGAGACGAGCTTTTATATGCCGTATGAG
ATGCGGCAAAGTACCTTCCAACAACCCCTCTAGATATCAGAGGATGAGAAATACTCTTGG
GCCAAATTCCAAGGGAGAGGAGCCTCACGCTGTTATGCACATTACAGGCCACATCAAACC
TTGGCCTCCAACTGGATTTAACGGATCTGAAGGTCAACCAGATGGATTGGAAGACATCGC
GAGTCAAAATCCAAATGCTACTGATTATTGCCTTGTTGCTATCGCACGTCTGCAAATTAC
CAGCCGACCGACGTTTGGCGACTTAAATCCCACCGCCGACTCTAACGAATTTGTGTCTCG
TCACAATTTTGACCACGTTTACACCTTCGTCGATTCGAGAGTGACGAGCATTCTCGGGTA
TCAGCCGCAGGATTTGCTCGGGAAGACGCCAGATGAATTCTACCATCCCGACGACGCCGA
ACAGGCAAAAGAGAGCTTCAAACAAGTCATGCTGCTGCGCGGACAAGTGTTCTCGATGAT
GTACCGATTCCGGTCACAGAACGGCGAATACCTTCTCATGAGAACAAGCTCTTTCGCTTT
TCAAAACCCTTACAACAACGAAGTTGAGTATATCGTATGCACAAACTCGTTGGTGAAGCC
GGGCCAGTCACAGCAAGCGGGCCGACCTGCCGAGGACCAACGCCAAGATTCCAAGACGCT
TCAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAG
TTACGGAGCCAAAACGATCGAGTCCCCCGGAATCCAATCTCCGACAGGCAATACTCTGAA
TTACAGCGGTCAAAGCAACACAGCTCCACAATACAATGCGCCGTCTGTTCCTGTCATGCC
TCAGACCGCATGGGGTCATAATAGTATGCAAAATGAAACCAACACTCAATATCCCCAGAC
CTTGATGGACCGCTACCCGGGAGGAGTTCCAAACCAGCCCTCGCACCCTGCCATGTACAA
TGTCTCCAACGGTCCATACCAAACCTCGCCTATGGGCGGTTATGGTGTTGAAGGCTGCGT
TCCAGATGCGTATCATACCCAGGAATCGATGCTGCCGCCGGTTTTAGATCAAGGCGGGAA
TAACTACGCTCAAGAGGATTTCCCTGATATGTTCTCGAATTATTCTCAGCATCAGCAGTG
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[10-77] 1.2E-21 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[21-74] 16.717 |
| Pfam |
bHLH_dom (IPR011598) - T[23-74] 1.1E-14 |
| CDD |
bHLH_dom (IPR011598) - T[23-75] 5.77879E-15 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[23-106] 8.77E-15 |
| SMART |
bHLH_dom (IPR011598) - T[27-80] 5.4E-13 |
| PRINTS |
Nuc_translocat (IPR001067) - T[36-51] 2.6E-73 - T[56-76] 2.6E-73 - T[87-110] 2.6E-73 - T[112-131] 2.6E-73 - T[144-162] 2.6E-73 - T[189-202] 2.6E-73 - T[229-248] 2.6E-73 - T[296-313] 2.6E-73 |
| ProSiteProfiles |
PAS (IPR000014) - T[94-165] 14.127 - T[308-353] 13.451 |
| SMART |
PAS (IPR000014) - T[96-163] 1.5E-10 - T[283-351] 2.3E-5 |
| Pfam |
PAS_fold (IPR013767) - T[100-201] 4.7E-9 |
| CDD |
PAS (IPR000014) - T[105-193] 1.7028E-10 - T[294-392] 1.43526E-14 |
| SUPERFAMILY |
PAS-like_dom_sf (IPR035965) - T[106-224] 4.61E-13 - T[295-396] 2.09E-26 |
| TIGRFAM |
PAS (IPR000014) - T[114-193] 2.8E-6 - T[308-391] 1.1E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARNT_HUMAN | 58.867 % | 486 | 1.03E-163 |
| ARNT2_HUMAN | 57.32 % | 478 | 7.45E-162 |
| BMAL1_HUMAN | 42.338 % | 313 | 7.68E-99 |