- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g35561.01.t
Possible name(s)
ARNT; ARNT2; ARNTL
Gene model
Location
chrUn [232,447,416 / 232,449,114]
Amino acid sequence
Length: 565
>Boschl.CG.Botznik2013.chrUn.g35561.01.p
MDSKASNQGMDDMSQADKERFARENHSEIERRRRNKMTAYITELSDMVPSCSALARKPDK
LTILRMAVTHMKQLRGAMPSGGADSAYKPAFLTDQELKHLVLESADGFLFVASCETGHVV
YVSDTVTSVLGQAHTDWLGHNIYDLIHPQDIPKVQEQLSLNDQGGGRMLDLKTGTVKKEG
QQSSVRVSNGSRRAFICRMRCGKVPSNNPSRYQRMRNTLGPNSKGEEPHAVMHITGHIKP
WPPTGFNGSEGQPDGLEDIASQNPNATDYCLVAIARLQITSRPTFGDLNPTADSNEFVSR
HNFDHVYTFVDSRVTSILGYQPQDLLGKTPDEFYHPDDAEQAKESFKQVMLLRGQVFSMM
YRFRSQNGEYLLMRTSSFAFQNPYNNEVEYIVCTNSLVKPGQSQQAGRPAEDQRQDSKTL
QPFDQSYGAKTIESPGIQSPTGNTLNYSGQSNTAPQYNAPSVPVMPQTAWGHNSMQNETN
TQYPQTLMDRYPGGVPNQPSHPAMYNVSNGPYQTSPMGGYGVEGCVPDAYHTQESMLPPV
LDQGGNNYAQEDFPDMFSNYSQHQQ
Nucleotide sequence
Length: 1,698
>Boschl.CG.Botznik2013.chrUn.g35561.01.t
CATGGATAGCAAAGCAAGCAATCAGGGAATGGACGACATGTCGCAGGCGGACAAAGAACG
ATTTGCGAGAGAGAACCACTCGGAAATAGAGAGGCGACGTCGAAATAAAATGACTGCGTA
TATTACCGAACTATCTGACATGGTCCCGAGCTGCAGCGCCCTGGCTCGAAAACCAGATAA
ATTGACAATCCTTCGGATGGCGGTCACGCACATGAAACAATTACGCGGAGCAATGCCAAG
TGGAGGTGCTGACAGTGCGTACAAGCCTGCATTTCTCACGGATCAAGAGTTGAAGCATTT
AGTCCTGGAATCGGCCGACGGGTTCTTGTTTGTTGCGTCTTGCGAGACGGGCCACGTGGT
CTACGTCTCTGACACAGTCACGTCAGTTCTCGGTCAGGCGCACACCGACTGGCTGGGTCA
CAATATTTACGACCTGATCCACCCGCAGGACATTCCAAAAGTACAGGAGCAATTGAGTCT
CAACGATCAAGGAGGTGGCCGCATGCTGGATCTTAAAACCGGAACTGTAAAGAAAGAAGG
GCAGCAAAGCTCTGTGAGAGTGTCTAACGGTTCGAGACGAGCTTTTATATGCCGTATGAG
ATGCGGCAAAGTACCTTCCAACAACCCCTCTAGATATCAGAGGATGAGAAATACTCTTGG
GCCAAATTCCAAGGGAGAGGAGCCTCACGCTGTTATGCACATTACAGGCCACATCAAACC
TTGGCCTCCAACTGGATTTAACGGATCTGAAGGTCAACCAGATGGATTGGAAGACATCGC
GAGTCAAAATCCAAATGCTACTGATTATTGCCTTGTTGCTATCGCACGTCTGCAAATTAC
CAGCCGACCGACGTTTGGCGACTTAAATCCCACCGCCGACTCTAACGAATTTGTGTCTCG
TCACAATTTTGACCACGTTTACACCTTCGTCGATTCGAGAGTGACGAGCATTCTCGGGTA
TCAGCCGCAGGATTTGCTCGGGAAGACGCCAGATGAATTCTACCATCCCGACGACGCCGA
ACAGGCAAAAGAGAGCTTCAAACAAGTCATGCTGCTGCGCGGACAAGTGTTCTCGATGAT
GTACCGATTCCGGTCACAGAACGGCGAATACCTTCTCATGAGAACAAGCTCTTTCGCTTT
TCAAAACCCTTACAACAACGAAGTTGAGTATATCGTATGCACAAACTCGTTGGTGAAGCC
GGGCCAGTCACAGCAAGCGGGCCGACCTGCCGAGGACCAACGCCAAGATTCCAAGACGCT
TCAACCTTTTGACCAGAGTTACGGAGCCAAAACGATCGAGTCCCCCGGAATCCAATCTCC
GACAGGCAATACTCTGAATTACAGCGGTCAAAGCAACACAGCTCCACAATACAATGCGCC
GTCTGTTCCTGTCATGCCTCAGACCGCATGGGGTCATAATAGTATGCAAAATGAAACCAA
CACTCAATATCCCCAGACCTTGATGGACCGCTACCCGGGAGGAGTTCCAAACCAGCCCTC
GCACCCTGCCATGTACAATGTCTCCAACGGTCCATACCAAACCTCGCCTATGGGCGGTTA
TGGTGTTGAAGGCTGCGTTCCAGATGCGTATCATACCCAGGAATCGATGCTGCCGCCGGT
TTTAGATCAAGGCGGGAATAACTACGCTCAAGAGGATTTCCCTGATATGTTCTCGAATTA
TTCTCAGCATCAGCAGTG
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[10-77] 1.2E-21 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[21-74] 16.717 |
| Pfam |
bHLH_dom (IPR011598) - T[23-74] 1.0E-14 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[23-106] 8.51E-15 |
| CDD |
bHLH_dom (IPR011598) - T[23-75] 5.63612E-15 |
| SMART |
bHLH_dom (IPR011598) - T[27-80] 5.4E-13 |
| PRINTS |
Nuc_translocat (IPR001067) - T[36-51] 2.2E-73 - T[56-76] 2.2E-73 - T[87-110] 2.2E-73 - T[112-131] 2.2E-73 - T[144-162] 2.2E-73 - T[189-202] 2.2E-73 - T[229-248] 2.2E-73 - T[296-313] 2.2E-73 |
| ProSiteProfiles |
PAS (IPR000014) - T[94-165] 14.127 - T[308-353] 13.451 |
| SMART |
PAS (IPR000014) - T[96-163] 1.5E-10 - T[283-351] 2.3E-5 |
| Pfam |
PAS_fold (IPR013767) - T[100-201] 4.5E-9 |
| CDD |
PAS (IPR000014) - T[105-193] 1.6578E-10 - T[294-392] 1.3973E-14 |
| SUPERFAMILY |
PAS-like_dom_sf (IPR035965) - T[106-224] 4.47E-13 - T[295-396] 1.95E-26 |
| TIGRFAM |
PAS (IPR000014) - T[114-193] 2.7E-6 - T[308-391] 1.0E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARNT_HUMAN | 58.867 % | 485 | 8.0E-164 |
| ARNT2_HUMAN | 57.32 % | 478 | 4.32E-162 |
| BMAL1_HUMAN | 42.338 % | 313 | 6.08E-99 |