- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g29983.01.t
Possible name(s)
POC1B; TAF5L; WDR70
Gene model
Location
chrUn [196,738,802 / 196,740,629]
Amino acid sequence
Length: 576
>Boschl.CG.Botznik2013.chrUn.g29983.01.p
MSNDKNLEDVMGFGGFGKKAKVFDLASIFEETRRNAQSRSKQTLEDREEAETSANAIAQT
GTEVESEDEMIGPPIPTDLDIEKSQELDKESDEVVEKDDTDSENVTIIPASHEITLNHGV
KPVSAVALDPSGARLFSGSYDFDVNLWDFAGMDNSFRSFRHFQPCECHQIRHINYSATGE
NVLIISGHTAALNCGTWHPKVRSEFMTCSNDGTVRTWDLSSEGKTSKTIRKCKDKSGRRT
TPTCCTYNREGNLLAVACNDGSIQMWDEKMKVHTTHSLRNCHTTGTDTTCITFAYDSQLL
STRGGDDTVKIWDIRQFKRPVAVAQNLDNFFPMTDCVFSPNNKIVVTGISVRKGKGKGKL
IFMDTNELEIVNEMEVSDASVIRCIWHPKLNQILVGTGDGNVKVLYDPQRSFRGAKLCVV
KKRQKTNHAEVFIRHKIITPYSLPLYRDQRERSTRKQLEKDRKDHVKSKRPQPPLSGPGA
GGRITAHGSTLSSFIMKSIAKNTADDSNPREAILRHAEVAAKEPRYVSHAYVDTQPEAIF
EQEPEEEPETLEPAWKKLKRNKASGLQKKEEAKDAQ
Nucleotide sequence
Length: 1,731
>Boschl.CG.Botznik2013.chrUn.g29983.01.t
GATGTCTAACGATAAAAATCTAGAAGACGTGATGGGTTTCGGCGGGTTTGGAAAGAAAGC
CAAAGTCTTCGATCTAGCCTCCATATTTGAAGAGACCAGACGAAACGCACAAAGTCGTAG
CAAGCAAACGTTAGAAGACAGAGAAGAAGCAGAGACGTCCGCAAATGCTATTGCCCAGAC
TGGAACGGAAGTAGAGTCGGAAGATGAAATGATTGGGCCTCCGATACCAACCGACTTGGA
CATAGAAAAAAGCCAAGAACTCGATAAAGAATCAGATGAAGTGGTTGAAAAGGATGATAC
TGACAGTGAAAACGTGACAATAATACCTGCTAGCCATGAAATCACATTAAATCACGGTGT
AAAGCCTGTATCTGCGGTCGCTTTAGACCCGTCCGGAGCCCGCCTTTTCAGTGGCAGCTA
CGACTTTGACGTTAACCTATGGGACTTCGCAGGCATGGACAACAGTTTTAGATCGTTCCG
ACATTTCCAACCGTGCGAATGCCACCAAATACGTCACATAAATTACAGCGCTACCGGCGA
AAACGTGTTGATAATATCTGGTCACACGGCTGCTTTAAATTGTGGAACTTGGCATCCTAA
AGTCCGTTCTGAATTTATGACTTGCTCAAACGATGGTACAGTTAGAACTTGGGACCTTAG
TTCGGAAGGAAAGACTTCAAAAACGATTCGAAAATGCAAGGATAAATCAGGACGCCGTAC
CACACCGACGTGTTGTACTTACAACCGCGAGGGTAACTTACTAGCTGTTGCCTGTAACGA
CGGCTCGATTCAAATGTGGGATGAAAAAATGAAGGTGCACACGACACACTCGTTACGTAA
TTGCCACACAACAGGCACGGACACGACGTGCATTACATTCGCGTACGATTCTCAGCTTTT
GTCCACCCGCGGAGGCGATGATACAGTCAAAATTTGGGATATACGTCAATTTAAGCGGCC
AGTCGCTGTCGCGCAGAATCTAGACAACTTTTTCCCGATGACGGACTGTGTTTTCAGTCC
TAATAACAAAATAGTAGTGACCGGAATATCGGTACGTAAAGGGAAAGGTAAAGGAAAATT
AATATTCATGGATACAAATGAGCTTGAAATTGTAAACGAAATGGAAGTATCAGACGCGAG
TGTGATACGGTGCATCTGGCACCCAAAACTGAATCAAATTTTAGTAGGAACTGGTGATGG
AAATGTAAAAGTCTTGTATGATCCGCAAAGAAGTTTCCGCGGTGCCAAACTTTGCGTTGT
TAAGAAACGCCAAAAGACAAACCACGCAGAAGTTTTCATTAGACATAAGATCATCACGCC
GTACTCGTTACCTCTGTACCGCGACCAGAGAGAACGTAGCACTAGAAAACAGTTGGAAAA
AGACAGAAAAGACCATGTTAAATCAAAAAGACCGCAGCCGCCGTTGTCAGGTCCTGGTGC
AGGTGGCCGTATCACCGCACACGGCAGCACATTATCTTCGTTTATCATGAAAAGCATCGC
TAAAAATACGGCGGACGATTCGAATCCGAGAGAGGCGATTTTGCGGCACGCTGAGGTAGC
CGCTAAAGAGCCTAGGTACGTTTCACACGCGTACGTGGACACTCAGCCTGAAGCGATATT
CGAGCAGGAGCCGGAAGAGGAACCAGAAACGCTGGAGCCGGCTTGGAAGAAATTGAAAAG
GAATAAGGCGTCGGGTTTGCAGAAAAAAGAAGAAGCAAAAGATGCTCAGTA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[95-404] 4.33E-47 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[99-227] 8.7E-16 - T[228-432] 2.4E-23 |
| SMART |
WD40_repeat (IPR001680) - T[109-148] 0.0023 - T[178-218] 6.1E-6 - T[225-267] 0.0012 - T[271-313] 0.76 - T[367-406] 4.4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[116-322] 19.749 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[116-148] 10.275 - T[185-227] 11.945 - T[235-267] 8.57 - T[289-315] 9.172 |
| Pfam |
WD40_repeat (IPR001680) - T[117-148] 0.0032 - T[243-267] 0.12 - T[277-313] 0.012 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[135-149] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[135-149] 2.9E-5 - T[205-219] 2.9E-5 - T[300-314] 2.9E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR70_HUMAN | 46.625 % | 597 | 0 |
