- Transcript 'KH2012:KH.C1.523.v1....' >
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- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g29297.01.t
Possible name(s)
GAA; MGAM; SI
Gene model
Location
chrUn [192,418,877 / 192,421,475]
Amino acid sequence
Length: 865
>Boschl.CG.Botznik2013.chrUn.g29297.01.p
MQCDIKSERRVDCFPESYPLSRDECVKRGCCYSPYKGNDDVPWCFFPQNYSYAYILTDLK
EVSYGYEGLLKIPNDTVAFPVKALPVLKLSVFLELEDRVRFKITDVNDNRYQVPLDVPKI
STKTRDMTKYSLQFSAINETFNLKIIRTDTNVAVFDTSIAPILYGDQFLQISTHLPSTNI
YGLGERHDSLRVDVNWKRIAFWAADRPPKVPETENLYGDHPFYVAVEPDGKSHGVFFLNS
NAKEAVLQPTPALTWRSIGGIMDFYVFLGPNPEQVVQQYTAVVGKSFMPPLWSLGYHLCR
WGYKTSNNTLGYVERMRKAKIPQDVQWNDIDYMDRKMDFTYDKNNFDTLPNLVDNLHSHG
QHYVMIIDPGISDQPDKGSYPPYDDAIEMDVVMKDHTNSKPIRGKVWPGEVIFPDFTNPN
IYPYWTKQLQRYHSQVPFDGVWIDMNEVSNFMDGSPENCYQNNTYDYPPYTPRVSGGKLF
SRTVCPSSLQYISTNYDVHSLTGLFEMKATSHALKVIRKKRPFVISRSTFPSAGVYGGHW
TGDVSSKWSHLKVSVAGILSFNMFGIPMVGADICGFGGSTNEELCIRWTQLGAFYPFSRN
HNDIAGSPQAPVDLSEKAQNIIRGALIARYTLLPYLYTLFYHSHVNGSTVVRPLFFEFPS
DSNTYGIDTQFMWGSGILISPVLDEGAVTVNAYFPAGYWYGPSGNSSADQPIHSKGEVIK
VSAPIEEIPIHIRGGHVIPCGNYDGATITNTSNDFILLAASDDAGKAAGHLYWDDGDSLD
TLSKGNYVLLKFTMRNNTLVTSIQEGSKQIASKMRLMLVNIYGVNCVPKTIKANAVSVPF
DYGPFEVAVHLPYLAMDEIIIKWTC
Nucleotide sequence
Length: 2,598
>Boschl.CG.Botznik2013.chrUn.g29297.01.t
TGCAATGCGATATCAAGTCCGAAAGACGCGTGGATTGTTTCCCCGAGTCGTACCCGTTGT
CTCGCGACGAATGTGTCAAGAGAGGATGTTGCTACTCTCCATATAAAGGGAATGACGACG
TACCGTGGTGTTTTTTCCCTCAAAACTATTCGTACGCTTACATATTGACTGATTTGAAGG
AAGTTAGTTATGGATATGAAGGATTATTGAAGATTCCAAATGATACGGTCGCGTTTCCTG
TGAAAGCATTACCAGTGTTGAAGTTATCAGTGTTCCTGGAATTAGAGGATCGCGTACGAT
TTAAGATTACAGATGTGAATGATAATAGATATCAAGTACCTTTGGATGTCCCTAAAATAT
CAACTAAGACTCGAGATATGACAAAATATTCTCTTCAATTCTCCGCGATAAATGAAACTT
TCAACTTGAAAATCATTCGTACTGACACCAATGTCGCAGTATTCGATACATCAATTGCTC
CGATATTATACGGAGATCAATTTTTGCAAATATCTACCCATTTACCGTCCACAAATATCT
ACGGCCTTGGCGAGAGACATGACAGTCTTCGTGTAGATGTGAATTGGAAAAGGATCGCGT
TTTGGGCTGCTGACCGCCCTCCTAAAGTACCTGAAACCGAAAATCTGTACGGAGATCATC
CTTTTTATGTAGCTGTCGAACCGGATGGTAAATCACACGGTGTATTCTTTCTGAATAGTA
ACGCAAAAGAGGCGGTTTTGCAACCAACGCCTGCGCTAACGTGGAGAAGTATCGGAGGTA
TCATGGATTTTTATGTATTTCTAGGCCCTAACCCGGAACAAGTTGTTCAGCAGTATACTG
CAGTCGTGGGCAAGAGTTTTATGCCTCCGTTATGGTCGTTGGGATATCACTTATGTCGCT
GGGGGTACAAAACCTCAAACAACACACTGGGATACGTAGAAAGAATGAGAAAAGCAAAGA
TACCGCAAGATGTGCAATGGAACGACATCGATTACATGGACAGAAAGATGGATTTCACTT
ACGATAAAAACAATTTTGACACACTCCCCAACCTTGTTGATAATCTCCACTCGCACGGTC
AGCATTATGTCATGATTATAGACCCCGGAATTTCAGACCAGCCTGACAAAGGGTCCTACC
CGCCTTATGATGATGCGATAGAGATGGATGTAGTTATGAAAGATCACACAAATTCAAAGC
CTATCCGTGGAAAAGTATGGCCCGGTGAAGTTATATTTCCTGATTTTACAAATCCAAACA
TATACCCTTATTGGACCAAACAGCTTCAAAGGTATCACAGTCAAGTTCCGTTTGATGGCG
TGTGGATTGATATGAACGAAGTTTCAAACTTTATGGATGGCTCTCCGGAAAACTGTTACC
AAAATAACACTTACGATTATCCTCCATACACGCCACGCGTTTCTGGAGGTAAATTATTCT
CAAGGACAGTGTGTCCATCATCTTTGCAATATATATCCACAAATTATGATGTCCACAGTT
TGACAGGCCTGTTTGAAATGAAGGCCACTAGTCACGCTTTGAAAGTTATCCGAAAAAAGA
GACCGTTTGTGATATCAAGATCAACGTTTCCGAGCGCTGGTGTCTATGGTGGTCATTGGA
CTGGGGATGTATCAAGCAAATGGTCGCATTTGAAAGTGTCTGTAGCTGGTATTCTGTCAT
TTAATATGTTTGGAATCCCGATGGTCGGCGCAGATATTTGTGGCTTTGGAGGGAGTACTA
ATGAAGAACTATGCATACGTTGGACTCAACTCGGCGCGTTCTATCCTTTCAGCCGTAACC
ATAATGATATCGCCGGAAGCCCGCAAGCTCCTGTGGATTTATCTGAAAAGGCACAAAATA
TTATAAGAGGTGCATTAATTGCTCGATATACCCTCCTACCATATCTGTACACATTATTTT
ACCACTCTCACGTAAATGGTAGCACTGTCGTGCGCCCTCTGTTTTTTGAATTTCCGTCAG
ACAGCAACACTTACGGCATTGATACTCAGTTTATGTGGGGATCTGGCATACTTATATCGC
CCGTGTTGGATGAAGGGGCTGTTACAGTAAACGCATACTTCCCAGCTGGGTATTGGTATG
GACCTTCTGGAAATAGTAGCGCTGATCAACCCATTCACTCCAAAGGGGAGGTAATTAAAG
TGTCAGCACCAATTGAAGAAATTCCTATCCATATACGAGGTGGTCATGTGATTCCGTGTG
GTAATTATGATGGCGCAACTATTACCAACACTAGCAATGATTTTATATTATTGGCGGCTA
GTGATGATGCGGGCAAAGCCGCGGGACACTTATACTGGGACGATGGCGATTCCCTTGACA
CATTGTCCAAGGGAAATTATGTTCTGTTGAAGTTTACTATGCGAAACAATACCTTGGTAA
CAAGCATACAGGAAGGCTCAAAGCAGATTGCTTCGAAAATGCGGCTCATGCTGGTCAACA
TTTATGGTGTCAACTGCGTTCCGAAGACCATTAAAGCTAATGCAGTTAGTGTGCCATTTG
ATTATGGCCCATTTGAGGTCGCGGTTCATTTGCCGTACCTTGCTATGGATGAAATAATCA
TCAAATGGACGTGCTAAT
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[1-48] 15.9 |
| SMART |
P_trefoil_dom (IPR000519) - T[1-51] 3.1E-6 |
| CDD |
P_trefoil_dom (IPR000519) - T[2-47] 1.54783E-11 |
| Pfam |
P_trefoil_dom (IPR000519) - T[3-47] 1.1E-10 |
| SUPERFAMILY |
Gal_mutarotase_sf_dom (IPR011013) - T[41-272] 1.35E-38 |
| Pfam |
Gal_mutarotase_N (IPR031727) - T[81-176] 3.7E-22 |
| Pfam |
Glyco_hydro_31_N_dom (IPR025887) - T[178-241] 1.0E-10 |
| Pfam |
Glyco_hydro_31 (IPR000322) - T[265-738] 2.0E-155 |
| SUPERFAMILY |
Glycoside_hydrolase_SF (IPR017853) - T[273-448] 2.63E-77 - T[483-647] 2.63E-77 |
| ProSitePatterns |
Glyco_hydro_31_AS (IPR030458) - T[440-447] . |
| ProSitePatterns |
Glyco_hydro_31_CS (IPR030459) - T[570-600] . |
| Gene3D |
Glyco_hydro_b (IPR013780) - T[633-734] 4.2E-36 - T[735-860] 1.0E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MGA_HUMAN | 42.186 % | 690 | 0 |
| SUIS_HUMAN | 41.879 % | 651 | 0 |
| LYAG_HUMAN | 45.537 % | 793 | 0 |