- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g27461.01.t
Possible name(s)
DDX27; DDX47; DDX54
Gene model
Location
chrUn [179,836,042 / 179,839,505]
Amino acid sequence
Length: 616
>Boschl.CG.Botznik2013.chrUn.g27461.01.p
MAELIQTIEEGEDVFIDEEQSDESEDENAKSKQRIKQLKQQKKGFNKDFVFDADDVDTSL
TMKAIMDSIHFKKHVARTSLDEKIAEVRKSRMIKNAHFNVSKTKDENKDVIEEEADATDS
ESELIVPKQDKIRIKKKKGAKEDDLEEEIRQNIKEKKVKLTIEGDISDEEFFASTPHWNP
EMNFAEMNMSRPLLKGISAVNYITPTPIQQATIPVALLGKDICACAATGTGKTAAFMLPV
LERLLFKPRLAPVTRVLCLVPTRELAIQVHSLTRQLAQFTDVQTCLAAGGLDLKSQEAAL
RQGPDVLIATPGRLIDHLHNTPSFQLDSVEILILDEADRMLDEFFAEQMTEIIKLCSPNR
QTMLFSATMTEQVNELAAVALKKPVKLFVNSNTEVAPYLRQEFIRIRPNKEGDREAIVAA
LCSRTFVTSVLMFTQTKKQAHRMHIVLGLLGLKVAELHGDLNQAQRLDGLEKFRSAEVDI
LVCTDLAARGLDISNVKTVINFTMPNTIKHYVHRVGRTARAGKTGRSVSLVGESERKMLK
EIVKLAKNPGCHTVLILKSHVLENSTVLVFDLRPYFVLFSTTTELRSFSSGICVAISAIV
TLTWRPYEKDRYFNLY
Nucleotide sequence
Length: 1,851
>Boschl.CG.Botznik2013.chrUn.g27461.01.t
TGGCGGAATTGATACAAACTATTGAGGAAGGTGAAGACGTATTCATAGATGAAGAACAGA
GCGATGAAAGTGAGGATGAAAACGCGAAAAGTAAACAACGAATAAAACAGTTGAAACAAC
AGAAAAAGGGTTTCAACAAAGATTTCGTCTTTGATGCCGATGACGTAGACACTTCCTTAA
CTATGAAAGCTATTATGGATTCAATACACTTCAAAAAACACGTAGCCAGGACGTCTTTGG
ATGAGAAAATTGCGGAAGTACGGAAATCCAGGATGATTAAGAATGCTCATTTTAACGTAA
GCAAAACGAAAGATGAAAACAAAGATGTGATCGAAGAAGAAGCAGATGCCACTGACAGCG
AATCCGAATTAATTGTGCCCAAGCAAGATAAAATCCGAATTAAAAAGAAGAAAGGGGCCA
AAGAAGACGATCTTGAGGAAGAAATTCGGCAAAACATTAAAGAAAAAAAAGTGAAATTAA
CAATCGAAGGCGACATCAGCGATGAAGAATTTTTCGCTTCGACGCCTCACTGGAATCCCG
AGATGAATTTTGCAGAAATGAATATGTCGCGTCCCCTTCTAAAAGGAATAAGTGCCGTAA
ATTACATCACCCCGACGCCTATTCAACAAGCCACCATTCCTGTCGCGCTTTTAGGTAAAG
ACATATGCGCTTGCGCCGCTACCGGTACGGGGAAAACTGCCGCATTTATGCTTCCGGTTT
TAGAGAGATTGCTCTTCAAACCTCGCTTAGCACCAGTCACAAGAGTTCTGTGTTTGGTTC
CTACTCGAGAATTGGCAATACAGGTGCATTCTCTCACGCGACAACTTGCTCAATTCACCG
ACGTTCAAACATGTCTCGCAGCCGGAGGCCTTGATTTAAAATCGCAGGAGGCCGCCCTAC
GACAAGGTCCGGATGTGTTAATCGCAACTCCCGGACGATTAATAGACCACCTGCATAACA
CTCCCTCTTTTCAGTTGGATTCTGTCGAAATTTTGATTTTGGACGAAGCAGATCGTATGC
TGGACGAATTTTTCGCCGAACAAATGACTGAAATTATCAAATTATGCTCGCCCAATCGAC
AAACGATGTTGTTTTCTGCCACAATGACGGAGCAAGTCAATGAGCTGGCAGCTGTCGCTT
TAAAAAAGCCTGTAAAATTGTTTGTCAATAGTAATACGGAAGTCGCCCCATATTTAAGAC
AAGAGTTTATTAGGATCCGACCGAACAAAGAAGGAGATCGGGAAGCCATCGTCGCTGCGT
TGTGTTCAAGAACTTTTGTAACCAGTGTTCTGATGTTCACCCAAACGAAAAAACAAGCCC
ATAGAATGCACATCGTTTTGGGTTTGTTAGGTCTTAAAGTAGCCGAATTGCACGGCGATT
TAAATCAGGCCCAAAGATTGGACGGGCTGGAAAAATTTCGAAGTGCGGAAGTTGATATTC
TAGTGTGTACGGATTTAGCAGCCCGTGGTTTGGATATTAGCAATGTAAAGACGGTTATCA
ATTTCACGATGCCAAACACCATCAAGCATTATGTGCACAGAGTTGGAAGAACTGCCCGCG
CTGGCAAGACCGGGAGATCGGTGTCTCTAGTCGGCGAATCGGAGAGAAAAATGTTGAAAG
AAATTGTGAAATTAGCAAAAAATCCGGGTTGCCATACCGTCCTTATTTTGAAGAGCCACG
TCTTAGAAAACTCAACTGTCCTTGTTTTCGACCTGCGTCCTTATTTTGTCTTATTTTCGA
CAACTACAGAACTTCGATCATTTTCCTCTGGTATCTGTGTTGCAATATCTGCAATTGTGA
CATTGACCTGGAGGCCATATGAAAAAGACCGCTATTTCAACTTATATTGAT
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[182-210] 10.809 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[201-402] 4.5E-55 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[206-376] 7.3E-45 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[213-387] 30.025 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[255-542] 4.1E-65 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[333-341] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[398-561] 20.074 |
| CDD |
Helicase_C (IPR001650) - T[403-530] 3.86064E-31 |
| Pfam |
Helicase_C (IPR001650) - T[417-522] 4.5E-27 |
| SMART |
Helicase_C (IPR001650) - T[441-522] 1.3E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX27_HUMAN | 59.89 % | 627 | 0 |
| DDX47_HUMAN | 39.348 % | 268 | 2.61E-83 |
| DDX54_HUMAN | 41.011 % | 244 | 1.34E-70 |
