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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S324...' > 
  2. Molecular Tool 'Ci-MRF-MO4468 (Meedel 2007)' > 
  3. Transcript 'Phfumi.CG.MTP2014.S4...' > 
  4. Region 'REG00001303' > 
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g27014.01.t

Possible name(s)

PCF11; RPRD1A; SCAF8

Gene model

Boschl.CG.Botznik2013.chrUn.g27014

Location

chrUn [176,457,370 / 176,465,412]

Sequences

Amino acid sequence

Length: 482

>Boschl.CG.Botznik2013.chrUn.g27014.01.p
MAKTIAEEYRSSLEDLTFNSKPHINVLTMLADEYQDNADLVVRVIEEKLEKAPPNCKLPI
MYLMDSIVKNVGGNYKPLFAKNIVKSFLIPFRQGDDKVKMSLYKLRSTWDSHFPLKRLYE
IDATIHTMDANWPVKPLPASLLEKTPSIHVNPKFLKKGDVSSAPSTPKISTVKTAGHSIS
DGSDLKQDLINKQKQLLELQQQKLLLELEQTKQQLAMREKKTLQRKEGTAVTRDPRVKQV
TGARAAVKTTLTNGDARDPRSKAKATPADPRKAVSDPTRKAPKKQEAAKPKSLEKKSPTE
ADKPEKKKKVTKSTGKSATAKTGKEMPKSPKSGPVKKQVPKKNSAKASKRTSDENRADDE
AKVPKKNDATSVKDSKVKEKVPRRSPLPTQPPVRHPKRNTSTERRHSPRRDTNMPRSRFG
PESLKNDDRKRFSPMSEGSISPRFSPEPDESPSRREDWGPSNKRPRHHDYPPPPPLAHMM
LP

Nucleotide sequence

Length: 1,447

>Boschl.CG.Botznik2013.chrUn.g27014.01.t
GATGGCGAAGACCATCGCCGAAGAGTACAGAAGCTCTCTGGAGGATCTGACTTTCAATTC
GAAGCCACATATCAACGTACTTACGATGCTTGCTGACGAATACCAAGATAATGCAGATTT
GGTTGTTCGGGTGATTGAGGAAAAGCTTGAAAAGGCTCCTCCGAATTGCAAGTTGCCGAT
AATGTATCTCATGGACTCCATTGTCAAAAACGTTGGTGGAAACTACAAACCTCTATTTGC
AAAGAATATTGTGAAAAGTTTTTTGATACCGTTTCGACAGGGAGATGATAAAGTAAAGAT
GTCTCTCTACAAATTGCGATCAACTTGGGATAGCCATTTTCCCTTGAAGCGTCTCTACGA
GATCGATGCGACTATCCACACGATGGATGCCAATTGGCCAGTCAAGCCGTTGCCAGCAAG
TCTGCTAGAGAAAACGCCTAGTATTCACGTGAATCCCAAGTTCCTGAAAAAGGGTGATGT
GTCATCTGCACCCTCAACACCCAAAATTTCTACAGTCAAAACCGCGGGACATTCTATATC
TGACGGCAGTGATCTGAAGCAAGATCTTATTAACAAGCAAAAGCAGCTCTTAGAGTTGCA
GCAACAGAAACTGCTCTTGGAACTGGAGCAAACCAAACAGCAGCTCGCAATGCGAGAGAA
AAAGACATTGCAACGAAAGGAGGGCACTGCAGTAACGAGAGATCCACGTGTCAAGCAAGT
AACAGGTGCACGCGCAGCTGTCAAGACAACACTTACTAATGGAGATGCCAGAGATCCTCG
TTCCAAAGCAAAGGCTACGCCAGCGGACCCCCGCAAGGCGGTTTCTGATCCAACGCGTAA
GGCACCAAAAAAACAGGAAGCCGCCAAACCAAAATCGCTGGAAAAGAAATCACCCACCGA
AGCCGATAAACCAGAGAAGAAAAAGAAGGTCACAAAAAGCACCGGCAAGTCCGCCACTGC
GAAAACGGGCAAGGAAATGCCAAAGAGTCCAAAATCTGGACCCGTTAAAAAACAGGTTCC
GAAAAAAAATTCCGCAAAGGCGTCCAAACGTACGTCGGACGAGAATAGAGCAGATGATGA
GGCAAAGGTTCCGAAAAAGAATGACGCGACATCGGTCAAGGACAGTAAAGTAAAGGAGAA
AGTTCCGAGAAGGTCGCCTTTGCCGACCCAACCGCCTGTGAGGCATCCTAAACGCAACAC
TTCTACGGAACGGCGTCATTCTCCTCGGCGAGACACGAACATGCCCCGGTCCAGATTCGG
GCCGGAATCTCTGAAAAATGATGATCGCAAAAGATTTTCTCCGAGGTCGGAAGGGTCGAT
TTCTCCGAGGTTTTCTCCCGAACCGGACGAGTCTCCGTCCAGGCGCGAAGACTGGGGTCC
GTCTAACAAACGACCGCGTCACCACGATTATCCACCGCCTCCGCCGCTTGCACACATGAT
GCTGCCC

InterProScan

Gene3D
ENTH_VHS (IPR008942) - T[1-131] 2.5E-37
ProSiteProfiles
CID_dom (IPR006569) - T[1-129] 31.902
SUPERFAMILY
ENTH_VHS (IPR008942) - T[4-137] 7.06E-38
SMART
CID_dom (IPR006569) - T[4-126] 3.9E-24
Pfam
RNA_pol_II-bd (IPR006903) - T[57-111] 4.2E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PCF11_HUMAN 51.818 % 216 2.48E-61