- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g24692.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
chrUn [161,402,708 / 161,404,127]
Amino acid sequence
Length: 453
>Boschl.CG.Botznik2013.chrUn.g24692.01.p
MTRDFARRYCTPSMIFCEVIMAQVQSSAGGAVVSDEAFEERAINEEYKIWKKNTPFLYDI
VMTHALEWPSLTVQWLPDITKPEGKDYTVHRAILGTHTTDEQNHLIIASIQLPNDQEHLE
SASLDTERGEFGGFGSVVGKIDIEIKINHEGEVNRARHMPQNPCVIATKTPSCDVLIFDY
TKHPSKPNNDGISNPDLRLKGHLKEGYGLSWNPCAAGQLLSASDDHTVCMWDITSSAKES
KVLNAKAVYKGHTAVVEDVAWHCLHENVFGSVADDQTLMVWDTRSKNSDKPSHTVSAHTA
EVNCLAFNPYSEYILATGSADKTVALWDLRNLKLKLHSFEHHKDEIFQVQWSPHTETILA
SSGTDRRLNVWDLSKIGEEQSNEDAEDGPPELLFVHGGHTAKISDFSWNPNEQWTICSVS
EDNIMQIWQMAENIYNEDQEITGPTVELNQGDS
Nucleotide sequence
Length: 1,362
>Boschl.CG.Botznik2013.chrUn.g24692.01.t
TGACGCGAGACTTTGCAAGACGCTATTGTACTCCATCAATGGTATTCTGTGAAGTAATTA
TGGCCCAAGTTCAAAGTAGTGCTGGTGGCGCGGTGGTATCAGACGAAGCGTTCGAAGAAA
GAGCCATAAACGAAGAGTACAAGATATGGAAAAAGAACACCCCGTTTCTTTACGACATCG
TTATGACTCACGCGTTGGAGTGGCCTAGCCTAACTGTGCAATGGCTACCGGACATTACGA
AACCCGAAGGTAAAGACTACACCGTCCATAGAGCTATCTTAGGAACCCACACCACCGACG
AGCAAAATCACCTCATAATTGCCAGCATTCAACTTCCGAACGATCAAGAGCATCTCGAAT
CTGCAAGTCTAGACACAGAACGAGGTGAATTCGGTGGTTTTGGATCAGTCGTCGGGAAAA
TCGATATTGAAATCAAAATAAATCATGAAGGAGAAGTCAACCGTGCCCGTCATATGCCAC
AAAATCCTTGCGTGATCGCGACTAAAACTCCATCCTGCGACGTGCTCATTTTTGACTACA
CTAAACATCCCAGCAAACCGAATAATGACGGGATTAGTAACCCTGACCTACGGCTCAAGG
GTCACTTGAAGGAAGGATATGGATTGTCCTGGAATCCGTGCGCTGCCGGTCAATTACTGA
GTGCTTCCGACGATCATACCGTTTGCATGTGGGATATAACTTCTTCTGCAAAGGAAAGTA
AAGTTTTAAACGCAAAAGCCGTTTACAAAGGTCACACCGCTGTTGTGGAAGACGTAGCGT
GGCATTGCCTGCATGAAAACGTATTTGGATCAGTCGCTGACGATCAAACGCTCATGGTAT
GGGATACGAGATCGAAAAACTCCGATAAACCAAGTCACACAGTCAGTGCTCACACGGCGG
AAGTAAACTGCCTTGCGTTTAATCCGTACAGCGAATATATACTCGCTACCGGATCAGCGG
ACAAGACAGTCGCCTTGTGGGACTTGAGGAATTTGAAATTGAAGCTACATTCGTTTGAGC
ACCACAAGGATGAAATCTTCCAAGTGCAGTGGTCACCGCATACTGAGACTATTCTCGCGT
CTAGCGGTACTGACAGACGTCTCAACGTCTGGGATCTGAGCAAGATCGGAGAGGAACAAT
CCAATGAGGATGCCGAAGACGGCCCGCCTGAATTACTCTTTGTGCACGGTGGACACACCG
CCAAGATATCCGATTTCTCTTGGAATCCTAACGAGCAATGGACTATCTGTTCGGTGTCGG
AAGATAACATTATGCAGATATGGCAGATGGCGGAGAATATATATAACGAAGATCAGGAAA
TCACGGGGCCTACCGTCGAACTGAATCAAGGAGACTCTTGAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[31-443] 5.4E-161 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[45-114] 1.4E-27 |
| SMART |
WD40_repeat (IPR001680) - T[140-179] 120.0 - T[192-232] 8.7E-4 - T[242-282] 0.0024 - T[288-328] 1.5E-10 - T[332-372] 2.3E-6 - T[389-429] 4.6E-4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[147-433] 2.83E-52 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[199-438] 34.987 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[199-241] 10.676 - T[249-291] 9.439 - T[295-331] 14.184 - T[339-381] 12.48 - T[396-430] 9.272 |
| Pfam |
WD40_repeat (IPR001680) - T[200-232] 0.13 - T[248-282] 0.037 - T[290-328] 8.7E-8 - T[336-372] 0.0012 - T[393-428] 0.014 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[219-233] 2.5E-8 - T[315-329] 2.5E-8 - T[359-373] 2.5E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[219-233] . - T[315-329] . - T[359-373] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 29.204 % | 114 | 1.56E-27 |
| RBBP7_HUMAN | 76.57 % | 687 | 0 |
| RBBP4_HUMAN | 80.693 % | 715 | 0 |