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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g24410.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Gene model

Boschl.CG.Botznik2013.chrUn.g24410

Location

chrUn [159,333,966 / 159,335,609]

Sequences

Amino acid sequence

Length: 218

>Boschl.CG.Botznik2013.chrUn.g24410.01.p
SLQREQEELKVKIAALATHCQIAREKCERPLTLSNQEMKQFQSEIFRLAQQGREHLRSKG
IASDKVRQTITLEIEVVEMKSIRRYFGTRGDDLGQLHSPHGICSTTTDDIVVADYGSHRI
QSKNHEYETATTTTNCDRVSLHSWFKIFNVNGQAKRVFGRKGESRGQFDGVADVCVTSQG
WIVASDERNHRIQIFDEYGNFVRKFGSKGSGEVCVTSH

Nucleotide sequence

Length: 658

>Boschl.CG.Botznik2013.chrUn.g24410.01.t
TCATTGCAACGTGAGCAGGAAGAGCTTAAAGTAAAAATTGCGGCCTTGGCAACTCACTGT
CAGATCGCAAGAGAGAAATGCGAACGACCTCTAACACTTAGCAATCAAGAAATGAAGCAA
TTCCAGAGTGAGATATTTCGTTTGGCGCAACAAGGTCGCGAACATCTACGCAGCAAAGGA
ATCGCGTCGGACAAAGTTCGTCAAACGATAACAGTTGAAATCGAAGTCGTTGAAATGAAA
TCTATTCGAAGATATTTCGGGACGAGAGGCGATGACTTAGGGCAGCTGCATTCTCCACAT
GGCATTTGCTCAACGACCACTGACGACATCGTAGTCGCAGATTACGGCAGCCATCGGATT
CAGGCGAAAAACCATGAATATGAAACAGCAACAACAACAACAAATTGCGACCGCGTTTCA
CTTCATTCCTGGTTCAAGATCTTTAACGTGAACGGACAAGCGAAGAGAGTCTTCGGGCGC
AAAGGAGAATCTAGAGGTCAATTCGATGGCGTGGCTGACGTGTGTGTGACGTCACAGGGA
TGGATCGTCGCTTCGGATGAGCGCAATCACCGAATCCAAATATTCGACGAATACGGGAAT
TTCGTTCGGAAGTTCGGTAGCAAAGGATCAGGTGAGGTGTGCGTGACGTCACATTAGT

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[73-217] 3.9E-26
ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[86-121] 10.177 - T[155-198] 12.665
Pfam
NHL_repeat (IPR001258) - T[97-121] 5.0E-7 - T[170-195] 2.0E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN41_HUMAN 38.4 % 79 4.97E-17