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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  2. Transcript 'Cisavi.CG.ENS81.R130...' > 
  3. Transcript 'KH2012:KH.L9.23.v1.A...' > 
  4. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g22060.01.t

Possible name(s)

SOX13; SOX5; SOX6

Gene model

Boschl.CG.Botznik2013.chrUn.g22060

Location

chrUn [143,669,272 / 143,671,233]

Sequences

Amino acid sequence

Length: 111

>Boschl.CG.Botznik2013.chrUn.g22060.01.p
ELSSADSRAYREKRDGQHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGAKWKEM
SNVEKQPYYEEQARLSKLHLEKYPDYKYKPRPKRTCIVDGKKLRISEYKVS

Nucleotide sequence

Length: 338

>Boschl.CG.Botznik2013.chrUn.g22060.01.t
CGAGCTGTCTTCTGCGGACTCGCGAGCGTACCGCGAAAAACGCGACGGCCAGCACATCAA
GCGACCCATGAACGCGTTCATGGTGTGGGCCAAGGACGAACGAAGGAAGATTCTGCAGGC
ATTCCCGGACATGCACAACTCCAACATCAGTAAAATATTAGGAGCGAAATGGAAAGAAAT
GTCCAACGTAGAGAAACAGCCTTACTACGAAGAGCAGGCTCGTCTCAGCAAGCTGCATTT
GGAGAAATATCCAGACTACAAATACAAACCGCGCCCCAAGAGGACATGCATTGTGGATGG
CAAGAAATTGAGAATATCAGAGTACAAGGTGAGCTAAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[7-88] 5.89E-28
Gene3D
HMG_box_dom_sf (IPR036910) - T[16-97] 5.4E-30
SMART
HMG_box_dom (IPR009071) - T[18-88] 9.1E-26
ProSiteProfiles
HMG_box_dom (IPR009071) - T[19-87] 20.742
Pfam
HMG_box_dom (IPR009071) - T[19-87] 5.2E-24

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 81.818 % 195 6.4E-60
SOX6_HUMAN 82.569 % 193 4.58E-59
SOX13_HUMAN 80.769 % 187 6.99E-58