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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'
  2. Transcript 'KH2012:KH.C1.144.v2....'
  3. Transcript 'Moocul.CG.ELv1_2.S19...'
  4. Transcript 'Phmamm.CG.MTP2014.S2...'
  5. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g13139.01.t

Possible name(s)

SHMT1; SHMT2

Location

chrUn [84,565,784 / 84,574,334]

Sequences

Amino acid sequence

Length: 519

>Boschl.CG.Botznik2013.chrUn.g13139.01.p
MCDKQDRAWLEDSLEKNDEDVFKIIRKEKERQRSGLELIASENFASAAVLQALGSCLNNK
YSEGYPGVRYYGGTEHIDELERLCQKRACEVFKLDADKWSVNVQPYSGSPANFAVFTAIV
QPHGRIMGLDLPDGGHLTHGFMTDKKKVSATSIFFESMPYKVHQDTGYIDYDRLAENAKL
FKPKVIIAGVSCYSRHLDYKRMKEIADENNAYLMADMAHISGLVAAGIVPSPFEHCDIVT
TTTHKTLRGPRSGMIFCRKGVRKVTAAGKEEMYNLEKPINEAVFPGLQGGPHNHAIGGVA
VALKQAMTEEFIADQKQTIANARHMAKLLEDRGFNVVTGGTDNHLMLVNLKNKGTDGNRA
DKTLEAIGIACNKNSCPGDTSALRPSGLRLGTPALTSRGFKEQDFDKVVDLIDRKLFQLY
CRNYTSFVQKVFVTLVNCLDRIVSVCDSGTVSIVTKCFVLHSAVQLTLDIQNSLEPKAPF
KDFKDKLYKDPKFVEEVKALKGEVSAFASRFPIPGLPTL

Nucleotide sequence

Length: 1,560

>Boschl.CG.Botznik2013.chrUn.g13139.01.t
CATGTGCGACAAACAAGATCGAGCTTGGCTTGAAGATTCGCTGGAGAAAAATGACGAAGA
CGTCTTCAAGATTATACGAAAGGAGAAGGAACGGCAGCGGTCTGGCTTGGAGTTGATCGC
GTCTGAGAACTTTGCCAGTGCCGCAGTATTACAGGCCTTGGGCTCCTGCCTCAACAACAA
ATACTCCGAAGGATATCCCGGTGTCCGATACTATGGTGGTACAGAACACATCGACGAACT
GGAGCGTCTATGTCAGAAAAGAGCTTGTGAAGTTTTCAAACTAGATGCTGATAAATGGAG
CGTTAATGTACAACCTTACTCGGGGTCGCCTGCGAACTTTGCAGTGTTTACAGCGATTGT
ACAACCTCACGGCAGAATAATGGGACTGGATCTGCCCGACGGCGGTCACCTGACTCACGG
ATTTATGACGGACAAAAAGAAAGTGTCGGCGACTTCCATATTTTTTGAATCGATGCCATA
CAAGGTTCACCAAGACACTGGCTACATCGATTACGACAGATTAGCGGAAAACGCGAAGCT
CTTCAAGCCGAAGGTTATTATCGCAGGAGTGAGCTGCTACTCTAGGCATTTGGACTACAG
GAGAATGAAGGAGATTGCTGATGAGAACAACGCATACCTCATGGCTGACATGGCTCATAT
CAGTGGCCTGGTCGCTGCTGGCATCGTGCCGTCTCCGTTTGAGCACTGCGACATCGTTAC
GACCACGACTCACAAGACTCTCCGCGGCCCACGCTCTGGGATGATTTTCTGTCGAAAAGG
CGTACGCAAAGTGACAGCCGCCGGTAAAGAGGAGATGTACAACCTGGAGAAGCCGATCAA
CGAAGCTGTGTTCCCTGGTTTGCAAGGAGGACCGCACAACCACGCGATTGGCGGGGTGGC
TGTCGCGCTCAAGCAGGCCATGACCGAGGAATTCATTGCCGACCAGAAACAGACTATTGC
TAACGCAAGACACATGGCCAAATTGCTTGAGGACCGAGGGTTCAACGTGGTAACTGGCGG
TACCGATAACCACCTCATGCTCGTCAATTTGAAGAACAAGGGTACCGACGGAAACAGAGC
CGACAAGACTTTGGAAGCGATCGGTATCGCGTGCAATAAAAACTCTTGCCCCGGGGACAC
GTCTGCATTGAGGCCCAGCGGATTGCGGCTCGGCACGCCGGCGCTGACCTCCAGAGGTTT
CAAGGAGCAGGACTTCGATAAAGTTGTTGATTTGATAGATCGAAAGCTCTTCCAACTGTA
CTGTCGAAATTATACCAGTTTTGTTCAAAAAGTATTTGTAACACTTGTAAATTGTCTTGA
CCGAATTGTAAGCGTCTGCGATTCTGGCACGGTCAGCATCGTCACAAAATGTTTTGTCTT
GCATAGCGCCGTGCAATTGACGTTGGACATACAGAATTCGTTGGAGCCCAAAGCCCCTTT
CAAGGACTTCAAGGACAAGCTCTACAAAGATCCCAAATTTGTGGAGGAAGTCAAAGCTCT
GAAAGGAGAAGTGTCGGCGTTCGCTTCAAGATTTCCTATACCGGGATTGCCTACATTGTG

InterProScan

PIRSF
Ser_HO-MeTrfase (IPR001085) - T[2-434] 2.8E-171 - T[459-517] 190.0
SUPERFAMILY
PyrdxlP-dep_Trfase (IPR015424) - T[9-417] 2.7E-174
Hamap
Ser_HO-MeTrfase (IPR001085) - T[13-515] 43.102
CDD
Ser_HO-MeTrfase (IPR001085) - T[15-416] 0.0
Gene3D
PyrdxlP-dep_Trfase_dom1 (IPR015422) - T[18-42] 1.4E-201 - T[317-415] 1.4E-201 - T[454-519] 3.3E-8
Gene3D
PyrdxlP-dep_Trfase_major (IPR015421) - T[43-316] 1.4E-201
ProSitePatterns
Ser_HO-MeTrfase_PLP_BS (IPR019798) - T[237-253] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GLYC_HUMAN 64.44 % 641 0
GLYM_HUMAN 54.776 % 565 0