- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g10067.01.t
Possible name(s)
PRDM10; PRDM15; PRDM4
Gene model
Location
chrUn [65,006,775 / 65,009,169]
Amino acid sequence
Length: 797
>Boschl.CG.Botznik2013.chrUn.g10067.01.p
MQEDEIFDPEVHHSVVRKIPNKSTRTKAKASLPDILYLKEAYGKIAVFSGGLLPKATQFG
PLEAPLATKKQINKQRFLMKLNTKKCHQLKTPSPSCHYVYYDTTDEHLCNWMMFVQPASV
LHEQNLCAHQNEDLVYFTTTKEIQPHEELKVWYAPTYAKFMGCGILSTTQDNVTAPKSNH
GRQNPERIGNPSRSMQVYPNSLVLERDVRSIPPKKRGWKRTKRIDADSQFALPINSSVCC
APDTTESRTCKICNKVFKNRGKLRIHSVIHSTARDFLCHHCGATFKRKDKLRDHEKRVHE
SKPLRPTKPPSNWEKFEYKCEECELGFRRRGMLISHIMKRHPGKDMSTVEQLSRPLLKVM
RRFQCPYCKKAYKSTTKRKLHVMKHHPEKPLPLGLQRKNSNNILLQDATIIAETSIPTNP
FKCPYCTMEYSMKHKMDKHIREKHSEYYQGDVARKTRQRRYSSGIVEENTNSTLLQDGNT
SQQNAVASEINHHDNAITTSHLFQSTASNHYSGIVSSTNDLQPNVQGCSVSGISNLNMSV
SVPQCMQKAMHDDVRHDRSSEDIIFDGLIQDTLPIQAGFDVTRALETDANRSSHNSLFIN
DGTVVPPIRDHIPGSDFLNQNIRALDNDHATGASLQQPQHYNDGRRTETRYHCGRKRILR
YYEDHQNQSTQSQINAELQYSQAGNLSRNSGLHNMAPDGVAWVPCNQTAVGITKSGATNN
ARMYIPCSNDRTPHCELRPTASLDNIIVNTDQRVNNIHTDWNDNDVNELMNERNFLFDSE
TEVVKVVTDVSDVVEVL
Nucleotide sequence
Length: 2,394
>Boschl.CG.Botznik2013.chrUn.g10067.01.t
GATGCAAGAAGATGAAATATTTGATCCTGAAGTACACCATTCCGTAGTGAGGAAAATACC
TAACAAAAGCACAAGGACCAAAGCAAAAGCATCTCTACCAGATATACTTTACCTGAAGGA
GGCATATGGTAAAATTGCAGTTTTTTCAGGTGGACTTCTACCGAAGGCAACGCAATTTGG
TCCACTCGAGGCACCCCTTGCGACGAAAAAGCAGATAAATAAACAGAGATTCCTGATGAA
GCTTAACACTAAGAAGTGTCACCAACTCAAAACCCCATCACCCTCCTGCCATTATGTTTA
CTATGACACAACGGATGAGCATCTGTGTAATTGGATGATGTTCGTTCAACCAGCTAGTGT
ACTTCATGAACAAAATCTGTGTGCACACCAAAATGAGGATTTGGTCTACTTCACGACAAC
TAAAGAAATTCAACCGCACGAGGAGTTGAAGGTGTGGTATGCTCCTACTTACGCCAAGTT
CATGGGCTGTGGCATTCTTTCAACCACACAAGATAATGTCACGGCGCCAAAATCTAACCA
TGGTAGACAAAATCCAGAAAGGATTGGTAATCCATCTCGGAGCATGCAAGTATATCCAAA
TTCTTTAGTGTTGGAGAGAGACGTCCGGTCAATTCCACCTAAGAAACGAGGTTGGAAAAG
GACCAAAAGAATTGATGCAGATTCTCAGTTTGCTTTACCCATCAACTCATCTGTATGCTG
TGCCCCGGACACTACGGAAAGCAGGACATGTAAAATATGTAATAAGGTTTTCAAAAATCG
TGGAAAATTACGAATTCATTCTGTGATACACTCTACAGCAAGAGATTTCTTATGCCACCA
TTGTGGCGCGACATTCAAGCGCAAGGACAAGTTGCGGGACCATGAGAAACGAGTGCACGA
ATCAAAGCCGTTACGTCCCACCAAGCCTCCGTCAAATTGGGAAAAGTTCGAATACAAGTG
TGAGGAATGCGAATTAGGATTTCGCAGGAGAGGTATGCTAATTAGCCATATTATGAAAAG
ACATCCTGGTAAAGACATGAGTACGGTCGAACAGCTGAGTCGACCCTTGTTAAAGGTGAT
GCGAAGGTTCCAGTGTCCATATTGCAAAAAGGCGTACAAATCCACAACTAAAAGAAAGCT
GCATGTAATGAAACATCACCCTGAAAAACCTCTGCCGTTGGGCTTGCAGCGCAAGAATAG
TAATAACATATTGTTGCAAGATGCTACTATCATCGCAGAAACGTCGATCCCTACAAATCC
CTTCAAATGTCCTTATTGTACGATGGAATACTCCATGAAACATAAAATGGACAAACACAT
AAGGGAGAAACATTCTGAATATTATCAAGGTGATGTCGCCAGGAAAACTAGACAGAGAAG
GTATTCGTCTGGGATTGTCGAAGAAAACACAAATTCAACATTGCTTCAGGATGGCAATAC
ATCTCAACAAAATGCTGTAGCAAGCGAAATCAATCACCATGATAATGCCATCACTACCTC
TCATCTATTTCAATCGACAGCGAGTAATCATTATTCAGGGATTGTTTCTTCTACAAATGA
CTTGCAGCCTAATGTACAGGGTTGCAGCGTTTCTGGTATATCAAACTTGAATATGAGCGT
ATCAGTTCCCCAGTGTATGCAAAAAGCGATGCATGATGATGTTCGGCATGATCGAAGTAG
CGAAGACATCATATTTGACGGACTCATTCAAGACACCTTGCCTATTCAAGCCGGCTTTGA
TGTCACCAGAGCATTGGAGACAGACGCCAATAGGTCATCTCATAATAGCCTGTTTATCAA
TGACGGCACTGTAGTGCCACCTATTCGTGATCATATACCTGGCTCTGATTTCCTGAATCA
AAATATCCGTGCATTGGATAATGATCACGCAACTGGTGCATCACTGCAGCAACCGCAACA
TTACAATGATGGACGTAGAACTGAAACTAGGTATCACTGTGGTAGAAAAAGAATTCTTCG
TTACTATGAAGATCACCAAAATCAATCAACACAATCTCAGATCAACGCCGAACTGCAATA
CTCTCAAGCAGGAAATCTGTCACGCAATAGCGGACTACACAACATGGCACCTGACGGTGT
AGCATGGGTGCCGTGCAATCAAACTGCAGTTGGTATTACCAAATCAGGGGCCACAAACAA
TGCCAGAATGTATATACCATGTAGCAATGATCGTACGCCGCATTGTGAACTTAGGCCCAC
TGCTTCCCTTGATAATATTATAGTAAACACTGATCAGAGGGTTAATAATATTCACACCGA
TTGGAATGATAATGATGTCAATGAATTGATGAATGAAAGAAATTTTTTGTTTGATTCTGA
AACAGAGGTGGTCAAGGTGGTCACGGATGTTTCTGATGTAGTAGAAGTATTATA
| ProSiteProfiles |
SET_dom (IPR001214) - T[43-154] 8.628 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[248-275] 10.492 - T[276-304] 11.448 - T[318-346] 10.762 - T[363-390] 10.803 - T[421-449] 8.829 |
| SMART |
Znf_C2H2_type (IPR013087) - T[248-270] 0.011 - T[276-299] 0.019 - T[318-341] 0.0069 - T[363-385] 0.13 - T[421-444] 0.082 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[249-296] 6.72E-10 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[250-270] . - T[278-299] . - T[320-341] . - T[365-386] . - T[423-444] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRD10_HUMAN | 40.553 % | 174 | 5.29E-45 |
| PRDM4_HUMAN | 24.876 % | 100 | 1.18E-21 |
| PRD15_HUMAN | 36.095 % | 93.6 | 2.27E-19 |
