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  1. Transcript 'Haaura.CG.MTP2014.S4...' > 
  2. Transcript 'Haaura.CG.MTP2014.S9...' > 
  3. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g02757.01.t

Possible name(s)

COL11A1; COL5A1; COL5A3

Gene model

Boschl.CG.Botznik2013.chrUn.g02757

Location

chrUn [17,854,347 / 17,858,983]

Sequences

Amino acid sequence

Length: 328

>Boschl.CG.Botznik2013.chrUn.g02757.01.p
MGEKGERGLQGSAGPQGPKGDEGRTGPNGPQGPQGPPGLSGQTGIKGNKGSEGPQGPKGD
PGPEGAPGPPGPPGQLIQMPPEMSGGSRRRRKRDVIDTMADHPPGMEEIFAMLDSLIQEV
RMTKEPTGSREHPARSCKDLSLCHPDFQDGRYWIDPNGGCVNDSIQVECRFGQMVSTCIN
AETAYQKPMRWPKASPGTWFSSYNKGYRFKYPVHETQLKFLRLLSIKAQQNFTYDCVDSV
GWLDSEGRYDKALHLMGANNVPITSDSIDSTVTVLSDSCSSGEGTGRVELTVDTSDLDAL
PLYDYKSFDFGQKYQRHGFHLKEVCFMG

Nucleotide sequence

Length: 987

>Boschl.CG.Botznik2013.chrUn.g02757.01.t
TGGGCGAAAAGGGCGAGCGCGGACTTCAAGGATCAGCGGGCCCCCAGGGACCGAAGGGTG
ACGAAGGCCGGACTGGACCCAACGGACCTCAAGGACCGCAAGGACCGCCCGGTCTCTCGG
GTCAAACCGGTATCAAAGGAAACAAAGGTTCCGAAGGACCTCAAGGTCCCAAAGGTGACC
CCGGACCGGAAGGCGCCCCGGGACCACCCGGACCGCCAGGACAGCTTATCCAGATGCCGC
CTGAAATGTCAGGAGGAAGCCGACGCCGAAGAAAGAGGGATGTCATCGACACAATGGCGG
ACCACCCGCCCGGCATGGAGGAAATCTTTGCCATGCTGGACTCCCTCATCCAGGAAGTGA
GAATGACCAAAGAGCCGACAGGAAGCCGCGAACATCCGGCCCGCAGTTGCAAAGATCTCT
CACTCTGCCACCCGGACTTCCAAGACGGTCGATACTGGATTGATCCTAACGGCGGCTGCG
TCAACGACTCAATTCAAGTTGAATGCCGGTTTGGACAGATGGTCAGCACGTGTATAAACG
CGGAGACCGCATATGAAAAACCAATGCGTTGGCCGAAGGCATCTCCCGGCACCTGGTTCA
GTTCTTACAACAAAGGATACAGGGTCAAATACCCGGTACACGAGACTCAGCTGAAATTCC
TCCGTCTGCTGTCGATCAAAGCGCAACAGAACTTCACGTACGACTGCGTCGATTCGGTCG
GGTGGCTGGATTCTGAAGGCCGTTACGACAAGGCGTTGCATTTGATGGGCGCAAACAACG
TCCCCATAACGAGCGATTCTATAGACTCTACAGTAACTGTGTTGTCAGACTCGTGCTCCG
GTGGCGAAGGTACTGGCAGAGTAGAACTGACCGTGGACACGAGCGACCTCGACGCACTGC
CGCTGTACGACTACAAGTCGTTCGACTTCGGCCAGAAATACCAGCGTCACGGGTTCCACT
TGAAGGAAGTCTGCTTCATGGGCTAAG

InterProScan

Pfam
Collagen (IPR008160) - T[2-56] 8.4E-9 - T[23-75] 7.4E-9
Pfam
Fib_collagen_C (IPR000885) - T[106-326] 1.5E-63
SMART
Fib_collagen_C (IPR000885) - T[106-327] 3.3E-65
ProSiteProfiles
Fib_collagen_C (IPR000885) - T[107-327] 66.111
ProDom
Fib_collagen_C (IPR000885) - T[218-327] 6.0E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COBA1_HUMAN 45.161 % 219 4.56E-64
CO5A1_HUMAN 41.989 % 236 5.97E-70
CO5A3_HUMAN 37.96 % 185 2.48E-52