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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA129YG12' > 
  2. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chrUn.g02559.01.t

Possible name(s)

LSM10; LSM2; SNRPD1

Gene model

Boschl.CG.Botznik2013.chrUn.g02559

Location

chrUn [16,711,689 / 16,714,146]

Sequences

Amino acid sequence

Length: 128

>Boschl.CG.Botznik2013.chrUn.g02559.01.p
MKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNKEPVNLETLSIRGNNIRY
YILPDSLPLDTLLVDEGPKPRVQKDFIFGSESKYRIDNGVGESIHPIQNRLLLEYVILIV
DSICVHTA

Nucleotide sequence

Length: 387

>Boschl.CG.Botznik2013.chrUn.g02559.01.t
AATGAAGCTCAGTCACGAGACTGTCACGATCGAGCTGAAGAACGGGACTCAAGTTCATGG
AACTATTACGGGAGTGGATATATGCATGAACACCCATCTAAAGTCTGTCAAGATGACAGT
GAAGAATAAAGAACCGGTGAATCTTGAAACGCTGAGCATCCGCGGCAATAACATTCGTTA
CTACATCTTGCCGGATAGTTTGCCACTCGATACTTTGCTCGTTGATGAGGGTCCCAAGCC
CAGAGTTCAGAAAGATTTTATTTTTGGCAGCGAGAGTAAATACCGAATTGACAACGGTGT
TGGAGAGTCAATTCACCCAATACAAAACCGACTACTTCTGGAATATGTGATCCTAATAGT
CGATTCGATATGCGTGCATACTGCATA

InterProScan

SMART
LSM_dom_euk/arc (IPR001163) - T[1-63] 5.2E-14
PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[1-83] 7.2E-42
CDD
Sm_D1 (IPR034102) - T[1-79] 1.38401E-55
Pfam
LSM_dom_euk/arc (IPR001163) - T[2-62] 6.9E-18
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[2-80] 2.86E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 84.524 % 147 3.68E-47