Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C14.337.v1...' > 
  2. Transcript 'KH2012:KH.C14.337.v1...' > 
  3. Transcript 'Phfumi.CG.MTP2014.S4...' > 
  4. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr9.g54016.01.t

Possible name(s)

ATAD5; CHTF18; RFC1

Gene model

Boschl.CG.Botznik2013.chr9.g54016

Location

chr9 [2,947,991 / 2,950,811]

Sequences

Amino acid sequence

Length: 939

>Boschl.CG.Botznik2013.chr9.g54016.01.p
MDFDPYSEMAEEAAFEDNYAAEMELMREMEELPSAQDSDDLKSNQSRRKLFENEQPSTSA
VQDSSLLDILESELFIDEDDDLMPSAKRPRLDMIRTKPSHKLPTTLDEDLDEIKIKNESQ
EDDDSDKMIQRILNFRNRKAHEAEEFLQTSNQMSRNAVEKRRILEKRPLEGQCISATPTH
GSVCYMRINDDSKSLKGKHMTNLMQGVSLLPQSVSEMRQELMVEQDNQTLHDSHSIVQAI
RSRNLDGGNVENSTEFNDAQKFENLNDDNDIDISNADKIIANELWLDRFAPTQYPHLLSD
EHVNRSLLKWLKMWDFVVFGRKVKKKEEPPQDVGNLKKFNYFQKWAFDDRTDEYERPFFK
AALLHGPPGLGKTTLAHIIAKHAGYHVVEMNASDDRSAQVFRNKLEETTQMKSVLGHDER
PNCLIIDEIDGAPQATIDVLLNTMNKSRQKAEKKIGKRKKQGSNNILVRPIICICNDLYV
PALRQLRQQSFIVNFPPTRSSILASRLAHLCRVQQLHCDITTLLRLCEKTDNDIRSCVNT
LQFVKASGQDKLSVSAISAFQIGQKDQHKSMFKVWQEIFQLPKNKLATERQRNRNSHHNL
GENSSVSTRFYHIQHLVSANGEYEKTFQGVYENYLKVKFKDHTLVCVVKAHEWIELYDRL
SYLNTHLQDWSVMKFYPYLFVMFHMLFSCTNVPKIAFPTQSYENSKKTQRSENILKGMFL
EMSPQVRCYSTPHTIVTDSVPYILSIIAPTLRPVNSQLYTAAEKKVLEDVVSVMISYNLS
YKQVRDEDGRYDYQLEPSVTEVCEYAEAQQSNKLSYSTRQLIAKEVEMEKMRRFERAGRS
VSVPDNVKPAEPEKTEEKQQLEIKTLKDTLSQAKKPAEKPVIDFFCQFKRIKRPATATGS
EAAKKPVRDPGIGNSQIWYKFNEGYSNAVRQTVYVKDLL

Nucleotide sequence

Length: 2,820

>Boschl.CG.Botznik2013.chr9.g54016.01.t
GATGGATTTCGACCCGTATTCTGAAATGGCTGAAGAAGCCGCTTTTGAAGACAATTATGC
TGCAGAAATGGAATTAATGAGAGAAATGGAAGAGCTACCTTCTGCACAAGACAGCGATGA
CTTGAAATCGAACCAAAGCCGTCGTAAATTGTTTGAAAATGAGCAGCCTTCAACAAGCGC
CGTTCAAGATTCGAGTTTATTAGACATACTAGAATCGGAACTCTTCATTGATGAAGATGA
TGATCTTATGCCAAGCGCAAAAAGACCGAGATTGGATATGATACGAACAAAACCATCCCA
TAAATTACCTACAACTTTAGATGAGGATCTTGATGAAATAAAAATCAAGAATGAATCACA
GGAAGACGATGATTCTGATAAAATGATTCAAAGAATCCTAAATTTTCGCAACAGGAAGGC
ACATGAAGCCGAGGAATTTTTACAGACTTCAAATCAAATGTCGAGAAATGCTGTTGAGAA
GCGTAGAATTCTTGAAAAACGTCCGTTAGAAGGACAGTGTATTTCAGCAACGCCCACTCA
TGGATCAGTATGTTACATGCGAATAAACGATGATTCAAAATCGTTAAAAGGCAAACACAT
GACCAATCTTATGCAAGGAGTTTCTCTCTTGCCTCAAAGCGTATCGGAAATGCGTCAAGA
ATTAATGGTAGAACAAGACAACCAAACGTTGCACGATTCTCACAGTATTGTGCAAGCTAT
TCGCAGTCGTAATTTGGACGGTGGCAATGTTGAAAATTCAACCGAATTTAATGACGCACA
AAAATTTGAAAATCTAAACGATGATAATGATATTGACATATCCAATGCGGATAAAATCAT
TGCGAACGAACTTTGGTTGGACAGATTTGCTCCCACACAGTACCCCCACCTTTTGAGCGA
CGAGCATGTTAATAGGTCGCTTTTAAAATGGTTAAAAATGTGGGATTTTGTAGTGTTTGG
GCGTAAAGTTAAGAAAAAAGAAGAACCGCCTCAAGATGTCGGAAATCTCAAAAAATTCAA
TTACTTTCAAAAATGGGCGTTTGACGATCGTACCGATGAATATGAAAGGCCGTTCTTTAA
GGCTGCGTTACTACATGGTCCACCTGGTTTAGGTAAAACCACGCTTGCACATATTATCGC
AAAACACGCCGGGTATCATGTAGTTGAAATGAACGCTAGTGATGATAGGTCGGCGCAAGT
GTTCCGTAACAAGTTAGAGGAAACGACTCAGATGAAATCAGTTTTGGGGCATGATGAACG
TCCGAATTGTTTGATAATTGATGAAATTGACGGTGCGCCGCAAGCCACGATTGATGTTTT
ACTAAACACGATGAATAAATCAAGACAAAAAGCAGAGAAAAAGATCGGCAAACGTAAAAA
GCAAGGTTCTAACAATATCCTTGTTCGGCCGATTATCTGTATTTGTAATGATTTGTATGT
CCCTGCGTTGCGGCAACTGCGTCAGCAGAGTTTCATCGTAAATTTTCCACCAACAAGATC
ATCAATACTCGCGAGTAGACTAGCTCACTTATGCCGAGTTCAGCAACTGCATTGCGACAT
TACGACTCTGTTGAGACTATGCGAAAAGACAGACAACGACATACGTTCTTGCGTTAACAC
CTTGCAATTTGTGAAAGCGTCAGGGCAAGATAAATTGAGCGTCAGCGCGATATCTGCGTT
CCAAATCGGGCAAAAGGACCAGCACAAAAGCATGTTTAAAGTGTGGCAGGAAATATTCCA
GCTGCCTAAAAACAAATTAGCAACCGAAAGACAGCGTAACAGGAATTCGCACCATAATTT
AGGAGAAAATTCAAGTGTTTCGACTAGATTTTATCACATTCAACATCTGGTGTCGGCGAA
CGGGGAATATGAGAAGACGTTTCAGGGAGTTTACGAGAATTACTTGAAAGTGAAATTCAA
AGACCACACTTTGGTGTGTGTCGTCAAGGCTCACGAATGGATTGAACTTTACGATCGTTT
GTCGTATCTCAACACGCATCTTCAAGACTGGTCGGTGATGAAGTTCTACCCTTACTTATT
TGTGATGTTCCACATGCTTTTTTCGTGTACAAACGTTCCCAAAATCGCGTTCCCCACTCA
ATCGTACGAGAATTCAAAGAAGACTCAAAGATCTGAGAATATATTGAAGGGAATGTTCTT
GGAAATGTCGCCGCAAGTACGGTGCTACAGCACCCCGCATACAATCGTCACTGATTCCGT
TCCGTACATATTATCAATAATCGCGCCTACGTTGAGACCTGTCAATTCGCAGCTGTACAC
AGCGGCTGAGAAAAAAGTGCTTGAAGATGTGGTCTCAGTGATGATATCATATAATTTGTC
ATACAAACAAGTTCGCGACGAAGATGGGAGGTATGATTATCAGTTGGAGCCAAGCGTGAC
TGAAGTCTGTGAATACGCGGAAGCTCAACAATCGAACAAACTGTCTTATTCTACGAGGCA
GCTGATCGCAAAAGAAGTGGAAATGGAAAAAATGAGACGGTTTGAACGCGCGGGTCGTTC
TGTCTCTGTTCCTGACAACGTAAAGCCGGCAGAACCGGAGAAAACCGAAGAAAAACAGCA
GTTGGAAATTAAGACTTTGAAGGATACTCTGTCACAAGCGAAAAAGCCTGCCGAAAAACC
TGTCATCGATTTTTTCTGCCAATTCAAGAGAATTAAAAGGCCTGCTACGGCCACCGGCTC
GGAAGCGGCTAAAAAACCTGTGCGGGACCCAGGGATCGGAAATAGTCAAATCTGGTACAA
GTTCAACGAAGGCTACTCCAATGCCGTGCGGCAGACTGTTTATGTCAAGGATTTATTGTA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[283-320] 3.88E-29 - T[347-551] 3.88E-29
SMART
AAA+_ATPase (IPR003593) - T[358-517] 1.1E-9
Pfam
ATPase_AAA_core (IPR003959) - T[363-463] 3.9E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CTF18_HUMAN 36.787 % 521 4.03E-170
RFC1_HUMAN 24.545 % 118 5.04E-27