- Transcript 'KH2012:KH.C9.317.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g48417.01.t
Possible name(s)
LRP1; LRP1B; SORL1
Gene model
Location
chr9 [9,012,258 / 9,025,603]
Amino acid sequence
Length: 794
>Boschl.CG.Botznik2013.chr9.g48417.01.p
MGIFQCDGQADCPDGSDETGCTTTTSYVSTTTPSPFGHDKCGPSEMKCRQHDTCIPLSWK
CDGNNDCGDHSDEFDCGLPANGTGNTQVCVHSYWQYRCNHGECILAFFECDGDNDCGDWS
DEKHCPGFVDNANHPGCFTGNGVGYRGNRNYTKSGRTCQKWSSDVPHKPHYWPLDRDHNF
CRNPDEDGFGPWCYTTDKNKRWEYCGIPRCSNGTTPSAAPPTAEPKKCKDGMFECDNNKC
IHEGWVCDGAADCDDGSDETYCNATCQQDELRCGNGMCVLLTAKCDGVDDCKDNTDEQDC
VHGTVPTCDPATFFTCKDYAQCVPQGKVCDGVADCVDHSDEACNSTAKPAEGWVQCLNGK
GSYRPSLDGCNYIPTCVDLSDETNCPSHDVTVSLRKDSKCPDDSKKACQLIGWSPPKIPK
EIAGSVKFLIKYKEEQIYYDRPPVDVADDYQKITVASNQISALLPELEWYTRYSVIVVIM
YNGTTLPTATYNPLRFRTPLGPPKAPTNVKALVSGKIRDKFDVTVTWQSTAKTATGYFVK
VLYLNGGRPTVQRSMTRAITLRLYAGTANISVAAYNNEYNSTWSTPVRVVISDDIKLSPK
VTPMQYGCNVSWDASQHGSDTAGYRIRVDTTAVPGIDTKYAAANATTTHILLGKLRPATV
YKIAVAVVTKSRGAASYSDEVDCTPAGPTPPSDPRLFKPVPLTTKSVNFTWTPSTQKGQS
FEIRIVEPYVGSYSRGVVGMPKFDSSESVRDLSVHVNPGSTSGVVRWSRPMDTLIEPLVS
MAVRMNTLEDQLLW
Nucleotide sequence
Length: 2,385
>Boschl.CG.Botznik2013.chr9.g48417.01.t
TGGGCATTTTCCAGTGCGACGGTCAAGCCGACTGCCCAGACGGCTCAGACGAAACGGGCT
GTACAAGGACGACCTCCTACGTCAGCACCACCACCCCTTCGCCGTTTGGCCACGACAAGT
GCGGGCCGTCCGAGATGAAATGTCGCCAGCACGACACTTGCATCCCTCTCAGCTGGAAGT
GCGACGGGAACAACGACTGCGGCGACCACAGCGACGAGTTTGACTGCGGGCTGCCCGCCA
ACGGCACCGGGAACACGCAAGTTTGCGTTCATTCCTACTGGCAGTACAGGTGCAATCACG
GCGAGTGCATCCTCGCCTTTTTCGAGTGCGACGGCGACAACGACTGCGGCGACTGGTCCG
ACGAGAAGCACTGCCCCGGCTTTGTGGACAACGCGAATCATCCCGGGTGCTTTACAGGAA
ACGGGGTGGGCTATCGAGGCAACAGGAATTACACCAAGAGCGGACGTACGTGCCAGAAGT
GGTCGAGCGACGTGCCACACAAGCCGCACTATTGGCCGCTTGACCGCGACCATAACTTCT
GCCGGAATCCAGACGAGGACGGCTTCGGGCCTTGGTGCTACACGACTGACAAAAACAAAC
GGTGGGAATACTGCGGCATTCCGCGATGCAGCAACGGCACGACGCCCAGCGCCGCTCCCC
CCACTGCCGAGCCCAAGAAGTGCAAGGACGGGATGTTTGAATGCGACAACAACAAATGCA
TCCACGAGGGGTGGGTTTGCGATGGCGCGGCCGACTGCGACGATGGGTCTGACGAGACGT
ACTGCAACGCGACCTGCCAGCAAGGCGAATTGCGGTGCGGAAACGGCATGTGTGTTCTGC
TCACTGCGAAATGCGACGGTGTCGACGACTGCAAGGATAACACGGACGAGCAAGACTGCG
TGCACGGCACCGTGCCGACCTGTGACCCCGCGACTTTTTTCACGTGCAAAGACTATGCGC
AGTGCGTGCCGCAAGGTAAAGTTTGTGACGGCGTTGCGGACTGCGTCGACCACTCTGACG
AAGCGTGTAATTCGACGGCGAAACCAGCCGAGGGATGGGTACAATGCTTGAATGGAAAAG
GAAGCTACCGACCATCGCTAGACGGCTGCAATTATATTCCGACCTGCGTCGACCTTTCGG
ACGAGACGAACTGTCCGGGTCATGACGTCACGGTCAGTTTGCGAAAGGATTCCAAATGTC
CGGACGATTCCAAAAAAGCTTGCCAGCTCATAGGGTGGTCACCGCCTAAAATACCGAAGG
AAATTGCCGGGTCGGTGAAATTTCTGATTAAATACAAAGAGGAACAGATTTATTACGACC
GCCCGCCAGTCGACGTCGCTGACGATTACCAGAAAATCACTGTCGCTTCCAACCAGATAT
CGGCACTATTACCAGGGTTGGAATGGTACACAAGATATTCGGTAATCGTCGTGATCATGT
ACAACGGCACCACATTACCGACTGCGACGTACAATCCACTCCGGTTCCGCACGCCCTTGG
GACCTCCCAAAGCGCCCACCAATGTGAAAGCGTTGGTCAGCGGTAAAATCAGGGACAAAT
TCGACGTGACCGTTACGTGGCAATCTACAGCGAAGACCGCAACAGGATATTTTGTCAAAG
TCCTGTATCTGAACGGTGGACGTCCGACGGTTCAACGTTCAATGACTAGGGCGATAACTC
TGAGACTCTACGCCGGAACCGCTAACATCAGCGTCGCTGCCTACAACAACGAGTACAACA
GCACGTGGTCCACTCCCGTGCGTGTCGTGATCAGTGACGATATTAAGCTATCACCCAAGG
TGACACCAATGCAGTACGGTTGCAACGTATCGTGGGATGCATCTCAGCACGGAAGCGACA
CTGCGGGATACAGGATTCGCGTCGATACAACCGCTGTTCCCGGCATCGATACGAAATACG
CCGCCGCAAACGCCACCACCACGCATATCTTGCTTGGGAAACTTCGCCCCGCAACAGTCT
ATAAAATAGCTGTAGCCGTGGTTACAAAGTCGAGAGGCGCGGCCTCGTATTCTGACGAAG
TCGATTGCACTCCGGCGGGACCCACGCCACCTAGCGACCCGCGTCTATTCAAACCCGTTC
CCCTCACTACAAAGTCGGTCAACTTCACCTGGACGCCCAGCACCCAGAAAGGCCAGTCTT
TCGAGGTTCGAATCGTGGAGCCCTACGTCGGCAGCTATAGCCGCGGCGTGGTGGGCATGC
CGAAATTCGACTCGTCCGAGTCTGTGCGCGACTTGAGCGTGCATGTCAATCCCGGTAGCA
CCTCCGGCGTCGTTAGATGGTCCAGGCCAATGGACACCCTTATCGAACCGCTGGTAAGCA
TGGCTGTGCGAATGAATACACTGGAGGACCAACTTTTGTGGTGAT
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[1-23] 0.86 - T[40-78] 3.2E-11 - T[88-127] 1.3E-10 - T[227-264] 1.6E-12 - T[265-302] 1.3E-11 - T[307-345] 8.6E-10 - T[347-387] 0.11 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[4-21] 3.98163E-4 - T[41-76] 2.58119E-10 - T[95-125] 4.49325E-9 - T[228-262] 1.23967E-10 - T[266-300] 1.37494E-9 - T[310-342] 7.65191E-6 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[4-26] 1.83E-5 - T[40-76] 1.31E-9 - T[89-125] 9.82E-9 - T[225-262] 7.07E-10 - T[265-305] 2.49E-9 - T[306-342] 3.93E-7 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[40-76] 8.1E-10 - T[95-125] 9.1E-9 - T[226-262] 5.9E-11 - T[265-300] 2.9E-8 - T[307-342] 6.8E-7 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[40-77] 13.2 - T[88-126] 11.725 - T[227-263] 13.8 - T[265-301] 12.825 - T[307-344] 12.1 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[52-73] 4.5E-38 - T[101-122] 4.5E-38 - T[238-259] 4.5E-38 - T[276-297] 4.5E-38 - T[320-341] 4.5E-38 - T[361-382] 4.5E-38 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[54-76] . - T[103-125] . - T[240-262] . - T[278-300] . - T[322-343] . |
| SMART |
Kringle (IPR000001) - T[135-212] 1.1E-32 |
| SUPERFAMILY |
Kringle-like (IPR013806) - T[135-221] 9.65E-29 |
| Gene3D |
Kringle_sf (IPR038178) - T[136-212] 3.1E-25 |
| ProSiteProfiles |
Kringle (IPR000001) - T[136-210] 23.384 |
| Pfam |
Kringle (IPR000001) - T[137-210] 7.6E-21 |
| ProSitePatterns |
Kringle_CS (IPR018056) - T[180-193] . |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[411-592] 3.1E-9 - T[608-718] 1.64E-9 |
| CDD |
FN3_dom (IPR003961) - T[503-590] 0.00276046 - T[608-681] 0.00108129 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[591-692] 9.365 |
| Gene3D |
Ig-like_fold (IPR013783) - T[594-698] 1.4E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 29.929 % | 141 | 4.45E-34 |
| LRP1B_HUMAN | 30.105 % | 137 | 9.55E-33 |
| SORL_HUMAN | 25 % | 156 | 6.71E-39 |