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  1. Transcript 'Boschl.CG.Botznik201...'

Transcript Model

Transcript Id

Boschl.CG.Botznik2013.chr9.g47081.01.t

Possible name(s)

PDCD6IP; PTPN23; RHPN2

Location

chr9 [11,643,470 / 11,656,559]

Sequences

Amino acid sequence

Length: 715

>Boschl.CG.Botznik2013.chr9.g47081.01.p
MAYSLEVGRFIVAPLKKSSDVDLAKPIETFAKNTFDKVDDDLIKHIKDFNSLRKSAVGKV
QDRSSSSLNLLLRYYDQFSALNRKVPFRESGGVNVSFAWKDAFDKGSLFSGPSKLVLSSG
EFELLCVIFNIAALKSQLASDTNLNSDDGLKAAATHFVEAAGMFQHIKDRIMSVTNQNPT
QDLMPVILTAFKAIMVAQAQECFYEKASSGKMKPDILAKVANQAATLYSEANQCVAECGQ
SLPKDVAQAISIRHDKFLCLAQFHQATVAHNAKKYGEEIARLRKVEPMLKALAKGNDLLP
GWSAKDFGTKVTTQLQASGKENDFIYHDTIPKESALQPIGKAVIAKPKDFNTSEVLSAKF
TDTFTSLLPLSIHNALQSFENRRKEVVEREVARLREQTTLLNGVMSSLNLPASLEDASGG
DQLPPSILEKSQAVLSKGGVQAIDTLQRDLPESLQRNEQILNEVTRMLNEEQASDDELRA
KFGAKWTRTKSIELTQPLRQEVDKYGKIIQNATKADGIVKEKVSKHREGMELLCMPADRL
KSSIPSASKVAALKDNPVVVELRQLCEQAETLKAEREVIENEIGSANSDMAEKFTQALAA
DGALNEEALSVEELDRIYQPLIEQVTASVHRQESVLANIQRASEQFTVLKSGGGANNRDE
ILKKIAAAHDGYMEVLSNLQEGQKFYNDLTELLIKLQNKCSDLVFARKTEKEEIL

Nucleotide sequence

Length: 2,147

>Boschl.CG.Botznik2013.chr9.g47081.01.t
AATGGCATATTCCTTAGAAGTGGGGAGGTTTATTGTGGCTCCCTTGAAAAAATCGAGTGA
CGTGGACCTTGCAAAGCCTATTGAAACATTCGCGAAGAATACATTTGACAAGGTTGATGA
TGATTTGATCAAGCACATAAAAGACTTCAATAGTCTCCGAAAATCAGCTGTCGGAAAAGT
TCAAGATCGAAGTTCAAGTTCGCTAAACCTGCTGCTAAGATATTACGACCAGTTTTCAGC
ACTTAACAGAAAAGTTCCGTTTCGAGAGAGTGGTGGGGTCAACGTATCATTCGCTTGGAA
AGATGCCTTCGATAAGGGGTCGCTTTTTAGTGGCCCTTCCAAGCTAGTATTATCATCCGG
AGAATTTGAACTTCTCTGCGTAATCTTCAATATCGCCGCTCTGAAGAGTCAACTAGCGAG
CGATACAAATCTTAACTCGGACGATGGCTTGAAAGCTGCTGCAACACACTTTGTGGAAGC
TGCCGGGATGTTTCAGCACATCAAGGACAGGATTATGTCGGTGACTAACCAAAATCCCAC
ACAGGACTTGATGCCGGTGATATTGACTGCGTTCAAAGCTATTATGGTTGCTCAGGCTCA
GGAATGCTTTTACGAGAAAGCTAGTTCTGGCAAAATGAAGCCAGACATCTTGGCGAAAGT
TGCCAACCAAGCAGCTACCTTGTACTCGGAAGCAAATCAATGTGTCGCCGAGTGCGGGCA
ATCCCTTCCCAAGGACGTAGCACAGGCGATATCGATACGCCATGACAAATTTTTGTGCCT
CGCCCAATTTCATCAAGCTACAGTTGCTCACAACGCTAAAAAATACGGAGAAGAAATTGC
TCGTTTAAGGAAAGTGGAGCCCATGCTGAAAGCACTTGCTAAAGGTAACGACCTGCTCCC
AGGGTGGTCGGCGAAAGATTTCGGTACCAAAGTCACGACTCAGCTGCAGGCGTCTGGCAA
AGAGAACGACTTTATCTATCATGATACAATTCCAAAAGAATCGGCGCTCCAACCTATCGG
GAAAGCGGTCATCGCCAAGCCTAAAGACTTCAACACTTCGGAAGTTCTCAGCGCTAAATT
CACAGACACATTCACCAGCCTGCTGCCGCTTTCGATTCACAACGCTCTGCAGTCATTCGA
GAATCGCAGGAAGGAGGTCGTAGAGAGAGAGGTTGCCAGATTGAGAGAGCAGACCACCCT
GCTCAATGGAGTGATGTCGTCTTTGAATTTGCCTGCGTCGCTAGAAGATGCGTCTGGCGG
CGATCAGCTACCCCCGTCCATCCTTGAAAAATCGCAGGCGGTTCTCAGCAAGGGCGGCGT
CCAAGCCATCGACACTCTGCAGAGAGACTTGCCAGAGAGCTTGCAACGCAACGAACAGAT
TTTGAACGAGGTCACCAGAATGTTGAACGAGGAACAGGCCAGCGACGATGAGCTACGAGC
CAAGTTTGGCGCCAAATGGACCAGGACTAAGTCCATCGAACTCACGCAACCCTTGAGACA
AGAGGTTGACAAGTATGGCAAGATCATTCAAAACGCGACAAAGGCCGACGGCATCGTTAA
GGAGAAAGTCAGCAAACACCGTGAAGGGATGGAGCTGCTCTGCATGCCGGCCGACAGACT
GAAGAGCTCGATACCCTCTGCCAGTAAAGTAGCCGCTTTGAAAGATAACCCGGTGGTCGT
GGAGCTGCGTCAGCTTTGCGAACAAGCGGAGACCTTGAAAGCGGAGAGGGAAGTCATCGA
AAACGAAATCGGTTCTGCCAACAGCGATATGGCCGAAAAATTCACGCAGGCTCTAGCGGC
AGACGGGGCTCTCAACGAGGAAGCGCTGTCCGTGGAGGAACTTGACCGGATCTATCAACC
TCTCATTGAGCAAGTCACAGCTTCCGTCCATCGTCAAGAATCTGTTCTGGCAAACATTCA
GAGAGCCAGCGAACAGTTTACGGTACTGAAATCTGGCGGGGGCGCCAATAACCGCGACGA
GATCTTGAAGAAAATCGCGGCGGCCCACGATGGCTACATGGAAGTCCTTTCGAATTTACA
GGAAGGACAAAAGTTCTACAACGACCTGACCGAGTTGCTGATCAAGCTCCAAAACAAATG
CAGCGATCTGGTGTTTGCCAGGAAGACGGAGAAGGAAGAGATTTTAA

InterProScan

Gene3D
BRO1_sf (IPR038499) - T[9-368] 1.8E-105
SMART
BRO1_dom (IPR004328) - T[9-391] 6.3E-112
ProSiteProfiles
BRO1_dom (IPR004328) - T[9-401] 50.733
Pfam
BRO1_dom (IPR004328) - T[11-387] 1.2E-98
Pfam
ALIX_V_dom (IPR025304) - T[422-710] 3.0E-88

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PDC6I_HUMAN 45.238 % 621 0
PTN23_HUMAN 23.967 % 171 5.56E-44