- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g44223.01.t
Possible name(s)
COL12A1; COL6A3; COL6A6
Gene model
Location
chr9 [15,679,093 / 15,686,537]
Amino acid sequence
Length: 736
>Boschl.CG.Botznik2013.chr9.g44223.01.p
MNSDCTQTCSCTGANQFDCIESKCNKNELCVSNKLGEFNCKGPLAAGCSGGSTVDLILVL
DSSGSVGYRNFQIVKKFVQKIVDALPVGPKDVQVGAITFTRGPRDLWALNKYPNKDDLLS
AIGDIPYRKGGTKTGKALTFVHDEKLTALAGRRPGVPAVVAVVTDGKSYDEVSTPAYMLQ
KKATIIAVGVKAIESLDYTRGGTKTGNAISAMTRQKFSKSQGRRKGIDAVTVIITDGKSY
DRVTAPSVELRKESYVNISEISIGEFPLTTFYIKVLALGVKNARKSQLDAMASAPIEIFS
RLIKSFYELDTIHGLMFNLICKSLTSDGDKCVATSKTDLLFIVESSGSVGKSNFESVKTF
VANVIERLEIGRKNILVGMMTYNRGYRDQWQLDTYADNKEGLISAVKDLRYTSGGRRISN
ALEFASKKKFTPSSGRRSDVPSVTIVITVGKSRGKFTVEARNLQSVSKVVALGIGDVDRK
YLNAIASDPSLVQNPKDYEDLDAAVDLTIVSLCAAQDSVDAAEYEWTQWFDRDNPSASGD
HEKLMDLRKENPNKICEEPKKIQARLVKSKKPFKSAGEKVSINAKEGFSCLNKEQRDKTC
EDYEVRFACPKVSSDPTGYSWTPWFDRDDPSASGDHEKLKDLRKENPNKICEEPNKIEAR
LVKTKKPSESAGEKVSMDAKTGFSCLNKDQRDKRCEDYEVRFSCPDESDPSTEWTKWFDR
DDPSATGDHEKLEKLR
Nucleotide sequence
Length: 2,211
>Boschl.CG.Botznik2013.chr9.g44223.01.t
TGAATTCAGACTGTACACAAACTTGCAGTTGTACTGGTGCCAACCAGTTTGATTGCATAG
AGTCAAAGTGCAACAAAAATGAATTATGCGTTTCAAACAAATTAGGGGAATTCAATTGCA
AAGGACCACTTGCCGGCGGCTGTTCTGGAGGCAGCACCGTTGATCTCATCCTTGTTCTTG
ACTCGAGTGGATCAGTGGGCTACCGAAATTTCCAGATTGTCAAGAAATTCGTGCAGAAAA
TCGTAGATGCGTTACCCGTTGGACCAAAGGACGTCCAAGTCGGCGCTATCACATTCACAC
GCGGACCCAGGGACTTGTGGGCTCTCAATAAGTACCCGAACAAAGACGATTTGCTTTCGG
CAATCGGCGATATTCCGTATCGCAAAGGAGGAACTAAGACAGGGAAAGCTCTTACTTTCG
TTCACGATGAAAAACTGACGGCGCTTGCTGGTCGCAGACCCGGCGTCCCAGCGGTGGTCG
CTGTGGTCACAGACGGAAAATCATACGACGAAGTATCAACTCCAGCGTATATGCTTCAGA
AAAAAGCGACAATCATTGCCGTCGGTGTAAAGGCTATCGAATCTCTGGATTATACAAGAG
GTGGTACAAAGACAGGAAACGCCATCTCTGCTATGACAAGACAAAAATTCAGCAAGTCTC
AAGGACGAAGAAAGGGTATCGACGCGGTCACGGTTATCATAACGGATGGAAAGTCGTATG
ATAGAGTGACAGCTCCATCTGTTGAACTCAGAAAAGAGTCATATGTAAATATATCTGAAA
TTTCCATCGGAGAATTTCCACTCACGACTTTCTACATAAAGGTATTGGCGCTCGGAGTGA
AAAATGCCAGAAAGTCTCAACTGGATGCAATGGCTTCTGCTCCGATCGAAATATTTTCGA
GGCTCATCAAATCATTTTACGAATTAGATACCATTCACGGATTGATGTTCAATTTGATTT
GCAAATCTCTAAGCTCTGATGGTGATAAATGCGTTGCAACATCCAAAACAGATCTTCTTT
TCATTGTGGAATCGAGCGGATCTGTTGGGAAATCGAATTTCGAATCAGTCAAAACCTTTG
TCGCAAATGTTATCGAAAGACTTGAAATCGGCCGGAAAAACATTTTGGTCGGCATGATGA
CTTACAATCGGGGCTACCGGGATCAATGGCAGCTTGACACTTACGCCGATAATAAAGAAG
GACTCATCTCCGCCGTTAAAGATTTGCGATACACTAGCGGTGGCAGGAGAATTAGCAATG
CTCTTGAATTCGCTTCAAAGAAAAAATTCACTCCGTCGTCTGGCCGCAGATCGGACGTTC
CCAGCGTCACGATCGTAATCACCGTCGGCAAATCGAGAGGTAAATTCACGGTCGAGGCTA
GAAACTTACAGTCCGTGTCCAAGGTTGTGGCGCTCGGTATTGGTGACGTGGACCGAAAGT
ATCTGAACGCAATTGCTAGTGATCCCAGTTTGGTACAGAATCCTAAAGATTACGAAGATC
TGGATGCCGCCGTGGATTTGACGATTGTATCTTTATGTGCTGCGCAAGGCTCGGTGGATG
CTGCTGAATACGAATGGACTCAGTGGTTTGACAGGGATAATCCAAGTGCTAGTGGAGACC
ACGAGAAACTGATGGACCTTAGGAAAGAAAATCCAAACAAGATTTGCGAAGAGCCAAAGA
AAATTCAGGCCAGGCTAGTAAAAAGCAAGAAACCATTCAAAAGTGCCGGAGAAAAGGTTT
CGATTAATGCAAAAGAAGGATTTTCTTGTCTCAATAAAGAACAACGAGATAAGACTTGTG
AAGATTATGAAGTTCGCTTTGCCTGTCCTAAAGGTTCATCTGATCCCACTGGGTACTCTT
GGACTCCGTGGTTTGACAGAGACGATCCAAGTGCTAGTGGCGACCATGAGAAATTAAAGG
ATCTAAGGAAAGAAAATCCAAATAAGATTTGTGAAGAACCAAATAAAATTGAAGCTAGGC
TGGTAAAAACCAAGAAACCTTCTGAAAGCGCTGGAGAAAAAGTATCGATGGATGCAAAAA
CAGGATTTTCTTGTCTCAATAAAGACCAGCGAGACAAGCGTTGTGAAGATTATGAAGTTC
GATTCTCTTGCCCCGACGGATCAGATCCCTCCACTGAATGGACCAAATGGTTTGACAGAG
ACGATCCATCAGCTACTGGCGACCATGAAAAACTAGAGAAACTAAGGTAAG
| Gene3D |
vWFA_dom_sf (IPR036465) - T[52-191] 2.9E-37 - T[192-332] 9.7E-17 - T[334-524] 2.6E-38 |
| SMART |
VWF_A (IPR002035) - T[53-217] 7.7E-36 - T[336-513] 2.5E-31 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[53-190] 4.59E-38 - T[191-322] 1.19E-15 - T[330-512] 2.09E-37 |
| Pfam |
VWF_A (IPR002035) - T[55-191] 1.0E-30 - T[338-502] 3.8E-31 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[55-190] 23.232 - T[191-320] 11.063 - T[338-508] 24.676 |
| Pfam |
WxxW_domain (IPR025155) - T[525-609] 3.8E-24 - T[621-704] 9.1E-25 - T[713-736] 0.005 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 35.417 % | 113 | 1.74E-25 |
| CO6A6_HUMAN | 24.854 % | 109 | 2.44E-24 |
| CO6A3_HUMAN | 26.453 % | 119 | 2.32E-27 |
